Camelia, the Perl 6 bug

IRC log for #bioperl, 2009-07-05

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All times shown according to UTC.

Time Nick Message
04:51 Emos joined #bioperl
14:47 alper joined #bioperl
16:00 Emos joined #bioperl
17:09 johnraekwon joined #bioperl
17:15 johnraekwon deafferret: got a response on that BioSQL query ... but I am not sure how to implement... you have a minute?
17:16 johnraekwon Write a Bio::Seq::BaseSeqProcessor-derived object that for every incoming sequence massages all Interpro links to either substitute the primary_id with the optional_id, or to add a second DBLink annotation with the optional_id of the original one as its primary_id. (pros: relatively easy, entirely under your control; cons: you either lose the primary_id now, or have two dbxref annotations for each of the original ones.)
18:12 johnraekwon Hey all, wondering if anyone there has experience with bio-perl db / biosql, might have a moment to talk me through a process?  More or less as described just above, but having looked at the module, I am not sure how to jump into it... the code is a bit opaque to me.
20:22 alper joined #bioperl

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