Camelia, the Perl 6 bug

IRC log for #bioperl, 2009-07-27

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All times shown according to UTC.

Time Nick Message
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17:09 faceface joined #bioperl
17:09 faceface hi
17:09 * deafferret waves
17:20 * faceface bows
17:20 * perl_splut pours a bucket of water on faceface *
17:20 perl_splut :)
17:24 faceface yarg!
17:33 perl_splut now you're all wet, but don't worry. It was just lukewarm tapwater rather than frigid ice water :)
17:42 rbuels it's like the frickin 3 stooges in here
17:43 faceface lol
17:43 faceface night
17:44 perl_splut yuck yuck
17:54 deafferret ah, a wise guy, eh?
17:54 deafferret woop woop woop woop woop
17:56 * perl_splut eye pokes deafferret *
17:56 perl_splut nyuck nyuck nyuck
18:08 deafferret I love how I go looking for results that match my hypothesis
18:09 deafferret look! 22 genomes later, I found one!
18:09 deafferret life: you're a mess
18:10 deafferret I'm starting to think nobody *designed* this stuff at all!!
18:11 rbuels lol
18:30 deafferret Candida_dubliniensis_CD36: I choose you!
18:52 biomoose joined #bioperl
18:52 biomoose biomoose: Christopher Fields master SHA1-5044ab5
18:52 biomoose * moving everything into a lib directory
18:52 biomoose http://bit.ly/MIc5b
18:52 biomoose biomoose: Christopher Fields master SHA1-c9289a0
18:52 biomoose add prelim. Build.PL
18:52 biomoose http://bit.ly/1OGwmt
18:52 biomoose biomoose: Christopher Fields master SHA1-e4e0c8d
18:52 biomoose * add Target, small changes to others
18:52 biomoose http://bit.ly/9eBLj
18:52 biomoose biomoose: Christopher Fields master SHA1-ecae615
18:52 biomoose * small overall changes
18:52 biomoose http://bit.ly/qbxdZ
18:52 biomoose biomoose: Christopher Fields master SHA1-4191666
18:52 biomoose * add AUTHORS file
18:52 biomoose http://bit.ly/1010ZZ
18:52 biomoose left #bioperl
19:09 perl_splut why moose doesn't just stick around... heheh
19:09 perl_splut like the Blender bot. It stays in the channel announcing the various commits
19:10 deafferret engineyard?? they're the folks that host github. is that bot part of github somehow?
19:10 perl_splut not sure
19:19 pyrimidine joined #bioperl
19:32 Topic for #bioperlis now http://www.bioperl.org - You can get help here, but you must be patient.  Paste to http://gist.github.com/.
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20:16 deafferret Bio::Tools::Run::StandAloneBlast++ outfile
21:17 deafferret grr
21:18 perl_splut ?
21:22 deafferret trying to shive this round data through a square pipeline
21:22 deafferret shove
21:22 * deafferret shivs it
21:24 perl_splut heheh
21:30 * deafferret votes that Bio::Index::Fasta::make_index() should be renamed index_files()
21:31 deafferret make_index('Foo');   screams "create an index called Foo" to me
21:33 perl_splut heheh
21:33 perl_splut yeah. lots of items have names that are slightly off
22:18 deafferret rbuels: pretty Twitter background. is that where you work?
22:18 deafferret smoking many of those poppies?
22:18 rbuels lol
22:18 rbuels no that's the Carlsbad, CA flower fields
22:19 rbuels would be cool to work there though
22:19 rbuels wonder what company is in that building....
22:20 rbuels http://maps.google.com/maps?q=carlsbad,+ca​&ie=UTF8&ll=33.127003,-117.318835&​amp;spn=0.007206,0.012274&t=h&z=16
22:20 rbuels there are the fields
22:20 rbuels oh, apparently that's the museum of making music
22:21 rbuels well, no.  it's next door to the museam
22:21 rbuels um.
22:22 rbuels savvier, inc. possible
22:23 rbuels http://www.savvier.com/news_10_12_05.html
22:23 rbuels yep i think that's their building
22:23 rbuels lol
22:23 rbuels 6 second abs.
22:23 rbuels nice.
22:23 rbuels so there you have it.  the WHOLE story.
22:24 rbuels coffee &
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22:37 biomoose biomoose: Christopher Fields master SHA1-377a32a
22:37 biomoose update deps
22:37 biomoose http://bit.ly/3VJasD
22:37 biomoose biomoose: Christopher Fields master SHA1-3e1622a
22:37 biomoose small update in case there is a name change
22:37 biomoose http://bit.ly/125Cab
22:37 biomoose biomoose: Christopher Fields master SHA1-e7302c9
22:37 biomoose * add ManageTypes role and tests
22:37 biomoose http://bit.ly/hvuqj
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22:40 rbuels deafferret: ping?
22:40 * deafferret startles
22:41 deafferret Progress:  2092 / 33  ... reblast ....
22:41 deafferret AF010588 ... didn't fi
22:41 rbuels i want to be able to pass a subroutine reference to some object, have the thing get run on a node in my cluster, and have the results come back transparently.
22:41 deafferret what the... paste FAIL
22:42 deafferret oh. stupid Terminal.ap
22:42 deafferret p
22:42 rbuels macbook fail!!!
22:42 rbuels :-P
22:43 deafferret rbuels: impossible. computers cannot transfer data. try again in 5 years
22:43 rbuels no kidding.
22:43 deafferret Progress:  2131 / 3470
22:43 deafferret I like how my denominator keeps growing  :)
22:43 rbuels this thing would probably have to serialize the whole perl process and resume it on another host
22:44 deafferret I've got a erlang thing going (sort of) for a cluster job
22:44 rbuels and then serialize again, ship it back, and start it again to return the correct things
22:44 deafferret since the cluster guys here hate Perl  :)
22:44 rbuels nutballs.
22:45 rbuels ballnuts.
22:45 * rbuels looks at Moo::SexWorkers for watching for competion of cluster jobs
22:45 rbuels oh, i mean moosex::workers
22:45 rbuels sorry, i put the double-colon in the wrong place
22:45 deafferret no you didn't
22:46 * deafferret moos
22:48 deafferret how many BLASTs does it take to get to the center of a Tootsie Pop (recursive BLAST process)?
22:49 rbuels depends on tootsie pop's genotype
22:49 rbuels Poppus tootsiennii var. cerasiforme?
22:49 rbuels Poppus tootsiennii var. schokoladii?
22:50 rbuels Poppus tootsiennii var. cyannococcius?
22:50 deafferret entrez: "moosex" : 0 results

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