Camelia, the Perl 6 bug

IRC log for #bioperl, 2009-09-23

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All times shown according to UTC.

Time Nick Message
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03:54 deafferret rbuels: Flight of the Concords is pretty funny, for your Netflix queue
11:58 ptl joined #bioperl
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14:06 faceface rbuels: I'M NOT ANNOYED DAMIT!!!
14:07 faceface p.s. why did you bounce my emails? Too many angries?
14:07 faceface pps did you get teh assembly?
15:18 deafferret rbuels: ME NEITHER!!!
15:18 rbuels faceface: i didn't get an email from you recently about assembly
15:24 faceface rbuels: http://www.potatogenome.net/index.php/Main_Page
15:24 faceface http://www.potatogenome.net/index.php/Data
15:25 faceface http://potatogenomics.plantbiology.msu.edu/
15:25 rbuels OK, OK, don't get so angry!
15:25 faceface grrrr!
15:25 rbuels lol
15:26 faceface I keep banging my head against bp, but I should contribute more than I complain
15:26 faceface there should be some ratio like that
15:26 rbuels what are these s. phureja bac ends?
15:26 faceface get with the times rbuels !
15:26 rbuels faceface: if you have your commits in a git repos, we can get them in
15:27 faceface rbuels: can you send me a 'how to'?
15:27 rbuels faceface: don't delete your git repos or anything like that
15:27 deafferret HULK SMASH!!
15:27 faceface currently I have svn co of bp, and some changes within that
15:27 rbuels ah.
15:27 faceface you won't like me when I'm angry
15:27 faceface I need a step by step guide ... (sorry)
15:27 faceface about phureja ...
15:28 faceface the NGS WGS needs a doubled monoploid to sequence
15:28 faceface phureja is that doubled monoploid
15:28 rbuels so the wgs is actually going to be phureja???
15:28 faceface weh have a shed load of solexa data ...
15:28 faceface didn't you know there will be 3 potato genomes now ;-p
15:29 rbuels sigh.
15:29 rbuels i don't remember anything about this from the last sol meeting
15:29 faceface solanum tuberosum sp... RH for short, which is diploid
15:29 * deafferret prefers the Ruffles genome
15:29 rbuels but i wasn't paying that much attention
15:29 rbuels faceface: you going to delhi?
15:29 faceface rbuels: you didn't hear about it? but all the meetings have been held in top secret so... oh
15:30 faceface no
15:30 rbuels aww
15:30 faceface yeah...
15:30 deafferret faceface: don't let any of that tax-funded research escape the Ivory Tower!
15:30 deafferret the Pringles genome is ok. But once I pop I can't stop.
15:30 faceface rbuels: I told them to use SGN for this site, but they politely ignored me
15:31 faceface deafferret: we can build them better!
15:31 rbuels it's politics.  robin buell wants to own the potato genome data, and so does lukas.
15:31 deafferret faceface: did you try HULK SMASH'ing them?
15:31 faceface ah...
15:31 rbuels robin buell is more 'down wid da potato crew'
15:31 * deafferret swears on all that in holy that he will derail all productivity here
15:31 faceface well, now you can download it.. so long as you promise not to look at it...
15:31 rbuels and lukas is more down with the tomato posse
15:32 faceface lol
15:32 faceface deafferret: your doing good so far
15:32 deafferret faceface: thanks. have you seen Wikipedia? you should check it out
15:32 deafferret rbuels: the Internet has porn now!
15:32 rbuels lol
15:32 faceface GAH!
15:32 faceface that page is making my browser die!
15:33 deafferret hmm... powerful porn
15:33 rbuels faceface: do you know how to use git?
15:33 deafferret faceface: or Facebook?
15:33 rbuels faceface: read the git tutorial, first step
15:33 faceface yeah, deafferret told me how
15:33 faceface deafferret: yeah dan.bolser
15:34 faceface ok
15:34 rbuels ok, i'll give you a howto in a second
15:34 faceface ty
15:34 deafferret faceface: you missed my 'derailing' joke there  :)
15:34 faceface deafferret: sorry
15:34 faceface FaceFaceBook?
15:34 deafferret <-- jokes
15:34 faceface <!-- laughs -->
15:34 deafferret oh, no. I was just quoting something time-sucky and non-productive
15:35 deafferret faceface: you should try geneaology!
15:35 deafferret faceface: and casinos!
15:35 deafferret faceface: community theatre!
15:35 * faceface plays poker
15:36 deafferret I'll organize another game if you come to Omaha, NE.  :)   http://jays.net/wiki/Poker
15:36 rbuels i just found a local copy of the github repo i deleted, i'm putting it back up
15:36 faceface omaha ? do you play omaha?
15:36 deafferret no, I live in Omaha and play Texas Hold-Em
15:36 deafferret no limit
15:36 deafferret <-- irony
15:37 faceface yeah... you should play hi/lo omaha pl ;-)
15:37 faceface thats what they play in texas
15:37 * deafferret spits
15:37 deafferret sure, why not? teach me
15:37 faceface you know you love it
15:37 rbuels stop your damn card games and work on bioperl!
15:37 deafferret stop all this potato nonsense
15:37 faceface eep!
15:38 deafferret <-- funded by Frito-Lay Research Derailers
15:38 rbuels card games!!!  bah!!!
15:38 faceface H.O.R.S.E?
15:39 rbuels poor github.  poor rails.
15:40 * rbuels should rewrite github with catalyst
15:40 * faceface uses Hg to store rbuels work
15:40 rbuels lol
15:41 faceface that fsa has 679 bacs for RH... how many did you harvest?
15:41 rbuels ermm....
15:41 * rbuels counts them
15:42 rbuels faceface: 566 :-(
15:42 rbuels faceface: guess i need to tweak my genbank query
15:43 rbuels actually, the autoupdate has not been running, because i need to update our code deployment methods to be able to run it on our servers
15:44 rbuels so maybe i just need to run it
15:44 faceface I see
15:44 faceface actually I think the deadline for RH BAC submission was recently
15:44 rbuels ah, that would do it
15:45 faceface not sure though... deadlines usually generate quite some chatter
15:46 faceface according to grep they are all in gb
15:49 rbuels faceface: you have a github account?
15:50 faceface yes, deafferret helped me to set one up
15:50 faceface http://github.com/danbolser/sandbox
15:50 faceface deafferret: have you optimized my shabby code yet?
15:51 deafferret faceface: which shabby code?
15:52 deafferret you seem to be under the impression I have a long term memory of any kind
15:54 rbuels faceface: you need to make a gravatar, go to gravatar.com
15:54 rbuels faceface: this is used by github and cpan, and other sites
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15:59 deafferret faceface: avoid the R-rated rbuels pic tho  :(
16:02 faceface OK
16:04 rbuels faceface: you have a local svn checkout of bioperl-live right now in which you have your changes?
16:04 faceface deafferret: teh above sandbox
16:04 faceface rbuels: yeah, but I also have conflicts :/
16:04 faceface rbuels: yeah, but I also have conflicts :-/
16:04 faceface rbuels: yeah, but I also have conflicts :-\
16:04 rbuels well, you'll need to svn up and resolve those conflicts
16:04 faceface but lets ignore that
16:04 faceface right
16:05 rbuels and then you can git clone my bioperl-live git repo (which i just now put back in place), and copy your changes in there and commit them
16:05 faceface oooookaaayy
16:05 faceface I think I get it
16:05 faceface no I do...
16:08 faceface dan.bolser' is not available
16:09 faceface No account found for that address,
16:09 rbuels you have a github account called danbolser, if that's what you're talking about
16:09 faceface meh!
16:09 faceface gravytar
16:10 faceface it says dan.bolser is taken, but also that dan.bolser does not exists
16:13 faceface wow... flash is really broken in ff 3.0
16:15 faceface I selected a gravy tar
16:23 faceface my diamonds are reckless.
16:23 faceface feels like there's a midget
16:23 faceface hanging on my neacklass
16:23 faceface necklass
16:24 faceface er... I rated it R
16:30 rbuels faceface: i'm updating our BAC mirror, quite a few more bacs coming down.
16:36 rbuels faceface: i'm going to give you access to the sgn Trac installation, our bug tracker and wiki
16:37 rbuels faceface: type this at the command line and then give me the output in a query:  'htpasswd -n <desired user name>'
16:39 deafferret faceface: I have not altered http://github.com/danbolser/sandbox. The day you uploaded that I spent some time with it, and believe I grok'd it. It looked to me like your code was fine given the input available. Is it no?
16:39 deafferret t?
16:40 deafferret faceface: I also came to realize that I cannot github clone your 'sandbox' because I already have a repo called 'sandbox'. boo!
16:41 deafferret which destroys the point-and-click simplicity of github pull requests
16:41 deafferret and jhannah/jhannah-sandbox seems to redundant
16:41 faceface rbuels: is this one of those tricks where you guess my favourite number?
16:42 faceface deafferret: the code works, but its dog slow
16:42 deafferret Faster, Trumpy. Kill. Kill.
16:42 faceface deafferret: s/to/too/
16:42 faceface <pedant />
16:58 deafferret huh. http://gitorious.org/
16:58 deafferret github competitor, apparently
17:06 faceface back to bioperl assembly munging...
17:07 faceface I now need to produce a hybrid assembly from the mapped reads.
17:08 faceface one github is unfortunate... two is downright careless!
17:11 deafferret :)
17:25 ptl joined #bioperl
18:12 faceface bleah... I have to integrate alignment data spread over 20 large ace files
18:33 deafferret -sigh- They request A, which makes no sense. I suggest they meant to request B. They agree. I deliver B. They say "this is great", but we actually need C.
23:18 ptl joined #bioperl
23:37 deafferret rbuels: It's the first of the month. So cash your check and come on.

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