Camelia, the Perl 6 bug

IRC log for #bioperl, 2009-10-07

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
00:41 pyrimidine joined #bioperl
00:48 mikeric joined #bioperl
00:48 mikeric left #bioperl
06:27 ilbot2 joined #bioperl
06:27 Topic for #bioperlis now http://www.bioperl.org - You can get help here, but you must be patient.  Paste to http://gist.github.com/.
10:26 faceface hi
10:27 faceface what is the best way to deal with points on a line?
10:27 faceface I want to pick the point closest to a given position?
10:27 faceface I want to pick points in a range
10:42 faceface feature collection I guess
10:42 faceface suitable for performing operations such as finding features within a range,
10:48 faceface how do I make a feature?
10:49 faceface Bio::SeqFeature::Generic?
11:29 faceface OK, how do I add an arbitrary 'score' to a particular feature?
11:42 faceface $feat->score()
11:52 faceface how do I 'identify' a feature?
11:52 faceface liike, give it a unique id
11:52 faceface "-tag => { ID => 'PK', ... " ?
11:53 faceface hmm.... I'm shoving my features into a collection rather than sticking them on a sequence.... any reason why I should do that or not?
11:54 faceface $fc->add_features( [$feat] );
11:54 faceface which looks weird, but what are you going to do?
13:42 kyanardag_ joined #bioperl
14:23 ilbot2 joined #bioperl
14:23 Topic for #bioperlis now http://www.bioperl.org - You can get help here, but you must be patient.  Paste to http://gist.github.com/.
14:24 * rbuels always enjoys faceface talking to himself
14:52 deafferret like Steven Colbert's "Formidable Opponent"
14:53 * rbuels does not know the formidable opponent thing
14:53 rbuels linkie?
15:00 deafferret letmeyoutubethatforyou.com
15:01 deafferret http://www.youtube.com/watch?v=K24VVdE5HnE
15:02 deafferret nm that clip sucks
15:03 deafferret you'll have to watch the Colbert Report sometime
15:05 deafferret http://www.colbertnation.com/the-colbert-r​eport-videos/241051/august-12-2009/formida​ble-opponent---health-care---burger-king
15:05 deafferret jump 50s in
19:26 flexdock joined #bioperl
19:26 flexdock hi
19:26 flexdock anybody working on drug design?
19:27 deafferret Not I.  :)
19:27 deafferret I am watching Weeds on Netflix, if that counts...
19:27 rbuels lol
19:28 rbuels not me either.
19:28 rbuels flexdock: there are usually only one or two people listening in here at any given time.
19:28 flexdock wow
19:28 flexdock interesting
19:28 flexdock so whats the point here?
19:28 rbuels flexdock: this is because biologists and bioinformaticists mostly don't know what irc is.
19:29 flexdock ok lets put it into antoher way, if you can help me
19:29 rbuels flexdock: well the point is the same as any irc help channel, it's just that participation is low
19:29 flexdock and do you know any other "chat" system for us?
19:29 deafferret small, but mighty
19:29 deafferret the bioperl-l mailing list is the main vehicle
19:30 flexdock and about molecular dynamics and similar stuff?
19:30 rbuels flexdock: this channel and that mailing list are for specific questions about the bioperl toolkit
19:30 flexdock i see
19:30 flexdock can you recommend me any other irc servers / channels ?
19:31 rbuels not that i know of
19:31 rbuels well i suppose there is #bioinformatics
19:31 rbuels on this server
19:31 rbuels there are a few people in there
19:31 flexdock ah
19:31 flexdock great
19:32 flexdock a last question
19:32 flexdock whats the point about this irc channels if everybody is sleeping?
19:32 deafferret lots of people are "here" 24x7, and when they wander back to a computer they can scroll back
19:32 rbuels flexdock: it depends on the irc channel.  some are quite active.
19:32 rbuels flexdock: #perl for example
19:33 * deafferret laughs
19:33 deafferret irc.perl.org #perl-help for helpfulness  :)
19:33 flexdock ok
19:33 rbuels flexdock: but i would not recommend going to #perl
19:33 flexdock thanks a lot
19:33 rbuels no problem.
23:53 * deafferret is shocked and dismayed by these Outkast lyrics
23:53 deafferret kids these days

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary