Camelia, the Perl 6 bug

IRC log for #bioperl, 2009-11-10

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All times shown according to UTC.

Time Nick Message
00:21 driveby_bot joined #bioperl
00:21 driveby_bot /home/svn-repositories/bioperl: r16347 (fangly) : Added support for Newbler (454/Roche GS de novo assembler)
00:56 driveby_bot joined #bioperl
00:56 driveby_bot /home/svn-repositories/bioperl: r16348 (fangly) : Improved documentation for the Newbler assembler wrapper.
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02:01 poincare101 I have question not about bioperl exactly, but about bioinformatics
02:01 poincare101 I have no background
02:01 poincare101 I'm a school going kid
02:01 poincare101 however, I have an interest and I know how to write perl scripts/programs
02:02 poincare101 how can I get started in bioinformatics?
02:06 brunov read books, there are many
02:06 brunov I guess this applies both for bioinformatics and programming
02:10 deafferret books? forget that! /quit !  :)
02:33 driveby_bot joined #bioperl
02:33 driveby_bot /home/svn-repositories/bioperl: r16349 (maj) : Prelim tests and data for Run::Maq
02:37 deafferret hmm... ncbi taxonomy dumps not the most intiutive things ever...
02:42 deafferret sigh... most links off ncbi taxonomy documentation are dead
02:42 deafferret lovely
02:48 driveby_bot joined #bioperl
02:48 driveby_bot /home/svn-repositories/bioperl: r16350 (maj) : A Maq wrapper for running maq commands separately,
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13:32 ptl just found an AIX 5.2 server with 39 years uptime.
14:04 brandi joined #bioperl
14:39 flu I found it to.  Right next to my swamp land in Florida that is for sale.
14:39 flu s/to/too/
15:21 brandi I have to produce different types of sequence files for collaborators, so I have a script that uses SeqIO, for the collaborator that needs BSML, they need something need for <Sequence> to have a class tag that could be "protein" or "rRNA" or "tRNA", how can I set that in the seq object so that it prints properly?
15:22 brandi When I try to load his BSML to SeqIO I can't see in the obj where class is populating anything
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22:42 driveby_bot /home/svn-repositories/bioperl: r16351 (fangly) : Documentation update
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23:21 deafferret brandi: I've never used BSML. Want to nopaste what you're getting and what you would prefer?
23:38 brandi left #bioperl

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