Camelia, the Perl 6 bug

IRC log for #bioperl, 2009-11-16

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All times shown according to UTC.

Time Nick Message
00:19 ptl joined #bioperl
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00:31 driveby_bot /home/svn-repositories/bioperl: r16376 (maj) : some new convenience features
00:39 ptl joined #bioperl
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01:36 driveby_bot /home/svn-repositories/bioperl: r16377 (fangly) : Aliased a minimum_overlap_length and minimum_overlap_similarity method for all assemblers that support it.
01:38 ptl joined #bioperl
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01:57 driveby_bot /home/svn-repositories/bioperl: r16378 (maj) : addl unit tests for bioperl-mode
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01:58 driveby_bot /home/svn-repositories/bioperl: r16379 (maj) : tars with new feature tweaks
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02:23 driveby_bot /home/svn-repositories/bioperl: r16380 (maj) : tweaks + retar
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02:34 driveby_bot /home/svn-repositories/bioperl: r16381 (maj) : credit where it's due\!
03:15 * deafferret takes some credit due elsewhere
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16:04 driveby_bot /home/svn-repositories/bioperl: r16382 (dave_messina) : Perltidied.
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17:24 driveby_bot /home/svn-repositories/bioperl: r16383 (dave_messina) : added support for parsing codeml from PAML version 4.3a (August 2009). Added new test data file 'paml43.mlc' and tests for it. All PAML.t tests pass.
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20:18 perl_splut we got drive-by botted...
20:27 * deafferret clutches his chest, falls
20:50 * perl_splut splashes water on deafferret *
20:50 perl_splut take some better acting classes
20:50 perl_splut That was bad in a "The Mask" kind of way
20:53 perl_splut 2 hours till I go home and I've got little or nothing to do to occupy my time...
22:03 deafferret perl_splut: all the bugzilla tickets are closed?? way to go!! :)
22:04 deafferret perl_splut: I have never ever ever had that problem, assuming Internet access and electricity.
22:04 deafferret or a book.  :)
22:07 * perl_splut looks around *
22:07 perl_splut who? me? a dev? nope
22:08 perl_splut yeah, not really supposed to surf the net or read while at work... heheh
22:14 deafferret bummer. do you have a biosql-schema commit bit?
22:14 deafferret anyone?
22:14 deafferret poke poke
22:17 perl_splut nope
22:17 perl_splut afraid most of my current work no longer utilizes Bioperl
22:21 deafferret that's sad  :(
22:21 deafferret biosql-schema is language agnostic
22:21 deafferret ()
22:38 perl_splut yes, but not what I need as I'm not doing bioinformatics stuff right now
22:38 deafferret that's double sad  :((
22:38 deafferret they're graylisting me on biosql-l
22:38 deafferret :(((
22:40 perl_splut could be good, could be bad... don't know if that is an upgrade to your status or not
22:44 perl_splut hmm... not sure what to call what I'm goofing with (since I have no work), but I'm playing with GraphViz to create a chart of linkages between a few objects (~200+ with 5+ linkages from each). Makes for a very big picture. Wonder if you can think of an app that might fill a need for drawing this dynamically, like http://www.liveplasma.com/
22:52 driveby_bot joined #bioperl
22:52 driveby_bot /home/svn-repositories/bioperl: r16384 (fangly) : Added a file cleaning step in the Minimo wrapper
22:54 deafferret perl_splut: eye candy: http://www.visualcomplexity.com/vc/
22:55 deafferret maybe some of those are along the lines of what you want
23:06 perl_splut will have to check later, but thanks
23:07 perl_splut final image size from GraphViz is a PS file that is 300"x160"...
23:12 deafferret :)
23:13 deafferret I've drawn some big ones, but not that big I don't think
23:13 deafferret not intentionally anyway
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23:30 driveby_bot /home/svn-repositories/bioperl: r16385 (fangly) : Updated assembly tests and did small fixes

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