Camelia, the Perl 6 bug

IRC log for #bioperl, 2009-12-16

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All times shown according to UTC.

Time Nick Message
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01:05 Biome biome: Chris Fields master SHA1-701729e
01:05 Biome remove mistakenly committed .AppleDouble
01:05 Biome http://bit.ly/6GSTFa
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14:37 driveby_bot /home/svn-repositories/bioperl: r16465 (scain) : Fixing a bug that caused the first sequence in a ##FASTA section to be lost; the problem was that Bio::SeqIO::fasta sets \n> as the line separator, but during processing, Bio::FeatureIO::gff swallowed the \n before sending the filehandle to SeqIO.  Now when fasta_mode is set, it rewinds the filehandle to get the preceeding line's \n.
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16:51 driveby_bot /home/svn-repositories/bioperl: r16466 (dave_messina) : added write_seq support. Module now has complete functionality. All tests pass.
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16:55 driveby_bot /home/svn-repositories/bioperl: r16467 (dave_messina) : added a little more POD. Move _initialize above next_seq and write_seq to follow the convention of other SeqIO modules.
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18:45 driveby_bot /home/svn-repositories/bioperl: r16468 (scain) : using the _pushback method instead of seek per Jason's suggestion.
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18:56 deafferret _pushbackitgood
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20:58 deafferret rbuels: do you deploy perl libs via local::lib and git?
21:00 rbuels no, not deploy
21:00 deafferret so how does git help you?
21:00 rbuels for local development, it helps give me better visibility and control over what goes into the local::lib dirs i create
21:01 rbuels like when you install some crap from cpan, it's nice to see exactly the list of all the files that went in there
21:01 rbuels and it's trivially easy to back out installations...
21:01 rbuels see the diff from upgrades....
21:01 rbuels etc
21:02 deafferret i see. thanks.
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21:20 driveby_bot /home/svn-repositories/bioperl: r16469 (fangly) : Better way to handle setting the effective assembly parameter flag when doing the average of several contig spectra.
21:20 rbuels zooom
21:21 rbuels i'm deploying today with my Xtreme Deployment System
21:21 rbuels which is a shipwright vessel packed in a debian package
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22:33 driveby_bot /home/svn-repositories/bioperl: r16470 (fangly) : New aln_wiggle option in the Minimo wrapper
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22:35 driveby_bot /home/svn-repositories/bioperl: r16471 (fangly) : Typo in Cap3 wrapper
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23:19 ptl howdy ho!
23:24 deafferret neighbor
23:25 deafferret was that a Tool Time reference? Or South Park Mr. Hankey?
23:25 deafferret so confused
23:36 ptl south park
23:36 ptl what's Tool Time anyway?
23:41 deafferret oh, oops. this   http://en.wikipedia.org/wiki/Home_Improvement
23:41 deafferret the neighbor guy always said 'heido ho neighbor!'
23:41 deafferret heidy ho
23:43 ptl thanks
23:44 deafferret you're welcome. critical knowledge, that.  :)

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