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All times shown according to UTC.
| Time | Nick | Message |
|---|---|---|
| 01:16 | driley joined #bioperl | |
| 01:24 | ptl_ joined #bioperl | |
| 01:56 | driveby_bot joined #bioperl | |
| 01:56 | driveby_bot | /home/svn-repositories/bioperl: r16590 (maj) : provide for raw xml retrieval; bug squishes |
| 01:56 | * deafferret | clutches all nearby chests, collapses |
| 01:56 | driveby_bot joined #bioperl | |
| 01:56 | driveby_bot | /home/svn-repositories/bioperl: r16591 (maj) : Result object to parse/wrap soap repsonse |
| 02:31 | driveby_bot joined #bioperl | |
| 02:31 | driveby_bot | /home/svn-repositories/bioperl: r16592 (maj) : some conveniences and back-compat |
| 02:33 | driveby_bot joined #bioperl | |
| 02:33 | driveby_bot | /home/svn-repositories/bioperl: r16593 (maj) : propset |
| 02:37 | deafferret | heh... interest as re-usability approaches zero? |
| 02:38 | ptl_ | ? |
| 02:38 | deafferret | just whining about $project. ignore me :) |
| 02:38 | ptl | what is the scope of that comment? I didn't get it... |
| 02:38 | oh,,, | |
| 02:38 | lol | |
| 02:39 | $project or propset ? | |
| 02:39 | deafferret | $work[1]->{project_of_the_day} |
| 02:40 | it's pretty similar, but not similar enough to re-use to these other 3 @projects :( | |
| 02:44 | ptl | :[ |
| 02:45 | i am taking a look at wxperl for a graphical interface to a perl application of mine | |
| 02:45 | deafferret | oh ya? that sits on top of wxWindows? |
| 02:45 | ptl | yep |
| 02:46 | deafferret | haven't done any of that... |
| 02:46 | ptl | there's already a command-line utility, I'll do a graphical shell for it and use the Storable unit to serialize stuff and send data via pipe from the cli to the gui |
| 02:47 | it seems neat | |
| 02:47 | deafferret | ooo... is this a BioPerl application? |
| 02:48 | ptl | no, but if it proves to be easy, I'll definitely start using it for bioperl |
| 02:48 | deafferret | woot! |
| 02:49 | next, my "BroodComb" application I just launched 3 minutes ago :) | |
| 02:50 | ptl | broodcomb? what does it do? |
| 02:51 | combs broods? | |
| 02:51 | deafferret | um... in-silico PCR (regexs), subsequence locations, etc |
| 02:51 | kind of a ball of goo from several other projects that I'm trying to formalize so maybe I can stop re-writing it every 3 months | |
| 02:52 | little SQLite, DBIx::Class set of scripts that do Stuf | |
| 02:52 | f | |
| 02:52 | not useful yet, but maybe someday | |
| 02:53 | ptl | I think I have some code like that too |
| 02:53 | too specific for my case, can't be generalized to others... | |
| 02:53 | deafferret | search.pl miRNA_seeds.fa human.mrna.fa ... stores in "hits", "hits_stats" tables, etc |
| 02:53 | ya, its all the while ($large_seq =~ /$small_seq/g) { | |
| 02:54 | ptl | got it :) |
| 02:54 | deafferret | forward and reverse, keeping track of strand, blah blah blah |
| 02:54 | or, in the case of Primers, it calculates Transscipts and stores that in teh database too | |
| 02:55 | and graph.pl kicks out little Bio::Graphics widgets ... and whatever else I glob into it | |
| 02:55 | from all these programs lying around | |
| 02:55 | that I'm tired of rewriting :) | |
| 02:55 | meh. -shrug- | |
| 02:56 | ptl | one of the uses for my learning wxperl is to maybe (most probably) work in some graphical sequence editor, like bioedit |
| 02:56 | deafferret | a sexy annotation gizmo would be neat :) |
| 02:57 | ptl | it has all the controls for that, I am still uncertain tho about the possibility of a MDI interface like the one in bioedit |
| 03:00 | deafferret | also, it combs broods. ;) |
| 03:22 | ptl_ joined #bioperl | |
| 08:40 | dmb__ joined #bioperl | |
| 12:22 | brandi joined #bioperl | |
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| 13:53 | brandi joined #bioperl | |
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| 15:04 | driveby_bot joined #bioperl | |
| 15:04 | driveby_bot | /home/svn-repositories/bioperl: r16594 (maj) : facilities for usehistory/webenv/querykey; tweaks |
| 15:07 | ptl joined #bioperl | |
| 15:43 | driveby_bot joined #bioperl | |
| 15:43 | driveby_bot | /home/svn-repositories/bioperl: r16595 (maj) : Result POD; tweaks |
| 16:37 | deafferret | ..o@.o.@@o.. |
| 16:38 | rbuels | truly that is the greatest of memes. |
| 16:38 | * deafferret | agrees |
| 17:34 | brandi joined #bioperl | |
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| 18:08 | brandi joined #bioperl | |
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| 18:59 | driveby_bot joined #bioperl | |
| 18:59 | driveby_bot | /home/svn-repositories/bioperl: r16596 (maj) : fix for multiple ids |
| 19:00 | driveby_bot joined #bioperl | |
| 19:00 | driveby_bot | /home/svn-repositories/bioperl: r16597 (maj) : add some goodies |
| 19:01 | driveby_bot joined #bioperl | |
| 19:01 | driveby_bot | /home/svn-repositories/bioperl: r16598 (maj) : also handle included schemata |
| 19:01 | driveby_bot joined #bioperl | |
| 19:01 | driveby_bot | /home/svn-repositories/bioperl: r16599 (maj) : working on autofetch |
| 19:11 | driveby_bot joined #bioperl | |
| 19:11 | driveby_bot | /home/svn-repositories/bioperl: r16600 (cjfields) : Allow other SearchIO text-based parsers, even though they're borked ATM |
| 19:11 | driveby_bot joined #bioperl | |
| 19:11 | driveby_bot | /home/svn-repositories/bioperl: r16601 (cjfields) : speling eror |
| 19:19 | perl_splut joined #bioperl | |
| 20:14 | driveby_bot joined #bioperl | |
| 20:14 | driveby_bot | /home/svn-repositories/bioperl: r16602 (cjfields) : At least parse the query bits if no hit is returned. This doesn't fix a bug where hits are returned but they are erroneous (mismunged data) |
| 20:15 | brandi joined #bioperl | |
| 20:24 | brandi left #bioperl | |
| 20:32 | perl_splut | someone needs to stop the drivebys before an innocent child gets hurt... :) |
| 20:33 | * deafferret | has grown used to it :) |
| 20:33 | rbuels | aw man, it's just like that episode of the wire |
| 20:33 | deafferret | better than silence I suppose :) |
| 20:33 | * deafferret | heads to Hamsterdam |
| 20:33 | rbuels | lol |
| 20:56 | perl_splut | I don't think I want to know what is in the redlight district of hamsterdam... |
| 21:01 | brandi joined #bioperl | |
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| 22:09 | driveby_bot joined #bioperl | |
| 22:09 | driveby_bot | /home/svn-repositories/bioperl: r16603 (cjfields) : fix to return w/o hits if no hits are found |
| 22:43 | ysopex joined #bioperl | |
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