Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-01-18

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All times shown according to UTC.

Time Nick Message
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03:20 driveby_bot /home/svn-repositories/bioperl: r16709 (kortsch) : Bug fix - dum.
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03:20 driveby_bot /home/svn-repositories/bioperl: r16710 (kortsch) : Bug fix - dum.
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03:20 driveby_bot /home/svn-repositories/bioperl: r16711 (kortsch) : Bug fix - dum.
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03:21 driveby_bot /home/svn-repositories/bioperl: r16712 (kortsch) : Bug fix - dum.
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03:21 driveby_bot /home/svn-repositories/bioperl: r16713 (kortsch) : Bug fix - dum.
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03:21 driveby_bot /home/svn-repositories/bioperl: r16714 (kortsch) : Bug fix
03:24 deafferret dum, di dum dum. dum, di dum dum DUM!!
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04:32 driveby_bot /home/svn-repositories/bioperl: r16715 (kortsch) : Crossbow is a subset of tab, so can't have both
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04:32 driveby_bot /home/svn-repositories/bioperl: r16716 (kortsch) : Bug fix
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04:50 driveby_bot /home/svn-repositories/bioperl: r16717 (kortsch) : Bug fix
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06:45 driveby_bot /home/svn-repositories/bioperl: r16718 (kortsch) : Refactored preparation for object creation and make use of B:A:IO:bowtie for bowtie format object output. Now BETA.
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06:45 driveby_bot /home/svn-repositories/bioperl: r16719 (kortsch) : Bowtie tests - now largely working (inline processing not compatible with CommandExts).
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16:11 space_agent1 Hello. I want to retrieve swissprot sequences via a perl script, but as opposed to Genbank I cannot find out how to.
16:21 space_agent1 ok just found out myself use Bio::DB::SwissProt;
16:32 faceface space_agent1: good work :_)
16:32 faceface :-)
16:35 space_agent1 Thanks for sharing my success with me :-)
16:36 space_agent1 At some point I think the bioperl tutorial should be updated. When I get more experienced I will try to do that.
16:44 space_agent1 I have the impression that a lot of people start biophyton and bioperl seems to get more and more ignored.
17:15 space_agent1 Ok here is another one, how do I parse the information listed under crossreference that are in uniprot entries (like http://www.uniprot.org/uniprot/A9A1H6) ?
17:41 faceface not sure using bioperl
17:41 faceface I had my own code to do that at some point
17:49 space_agent1 in which language did you do that?
17:50 space_agent1 would you mind sharing your code?
17:52 space_agent1 sorry have to go. will be online in about an hour again.
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19:35 driveby_bot /home/svn-repositories/bioperl: r16720 (lstein) : fixed a bug in gff3 dumping
20:05 deafferret time's up!
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21:00 driveby_bot /home/svn-repositories/bioperl: r16721 (lstein) : under some circumstances, child features would have different (and incorrect) types than their parent feature
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22:08 driveby_bot /home/svn-repositories/bioperl: r16722 (kortsch) : Clean up void warnings
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