Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-02-26

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All times shown according to UTC.

Time Nick Message
00:17 rbuels i want pyrimidine's driveby_bot
00:18 rbuels it would be nice to have it in #cxgn
00:34 * dferret sends spies to #cxgn
00:44 rbuels lol, you can go sit in there if you want.  it's on irc.perl.org
00:51 driveby_bot joined #bioperl
00:51 driveby_bot /home/svn-repositories/bioperl: r16877 (nml5566) : patched Bio::PrimarySeq.pm to deal with new circular revision genbank spec
00:51 driveby_bot Diff: http://tinyurl.com/ykmw45p
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02:12 * dferret bets GD can handle "more than 32,000 points on an X, Y graph"
02:42 dferret heehee  http://clab.ist.unomaha.edu​/~jhannah/tmp/sample31.png
02:50 dferret moved http://clab.ist.unomaha.edu/​~jhannah/tmp/chart_plot.png
03:09 brunov what are we lookin' at
03:13 dferret random dots. neat, huh?  :o)
03:14 dferret the request was "MS Excel dies after trying to scatter more than 32,000 points. Do you have something else?"
03:14 dferret so I sent them to that, or R
03:34 brunov R++
03:37 dferret R is really cool when I get it to work. It makes me sad when I have to wrestle it for 2 hours
03:41 brunov I haven't done anything fancy with it. I basically use it as a pretty plotter
03:42 brunov I like the ggplot library
03:43 dferret so many options. I think it's funny that MS-Excel crashes, Perl/GD takes < 2s  :)
03:47 dferret ha! I wonder if I can survive this  http://www.tequilajalisco.​com.mx/dulce/reserva.html
03:53 brunov ... staying at a comfortable hotel? I'm pretty sure you can ^_^
04:03 dferret I mashed the buttons, hopefully they got an email from me or something
04:04 dferret :)
04:21 brunov so when is this mejico viaje happening?
04:21 dferret Mar 11-16 woot!
04:22 dferret WOOT   http://jays.net/wiki/Mexico
04:22 dferret ^^^^
04:22 brunov woohoo!
04:22 dferret wall woot!
04:22 brunov make sure you get some of those jumping beans
04:23 dferret ooo, ya. /me adds to list
04:23 dferret somrero, carpet-shirt, hat-dancing, mariachi bands, tequila, JUMPING BEANS
04:24 dferret sombrero
04:24 brunov AWESOME
04:24 dferret UNA MAS SERVECA POR FAVOR
04:24 brunov CERVEZA, even
04:24 dferret that too!
04:24 brunov also, when you laugh, do: jajajaja, not hahahaha
04:24 brunov they won't understand you otherwise
04:24 dferret una mas! areba! areba! undelay
04:25 * dferret watches more Speedy Gonzales. critical background
04:25 brunov that's their whole culture right there
04:25 dferret do they do bull fighting in MX?
04:26 brunov mm i don't know, you mean matador?
04:26 brunov or two bulls against each other?
04:27 dferret shocked I am!  http://en.wikipedia.org/wiki/Speedy_G​onzales#1999-2002_Cartoon_Network_ban
04:27 dferret oh, need to get autograph of Taco Bell chihuhua too
04:27 dferret <--- loco gringo estupido
04:28 brunov don't call me gringo you f*cking beaner!
04:28 brunov I <3 manu chao
04:29 dferret ¡Ándale! ¡Ándale! ¡Arriba! ¡Arriba!
04:30 brunov ooo ooo you should have your SO be sang a serenata by mariachis
04:30 dferret so?
04:31 brunov Significant Other
04:31 dferret oh... I could video that and youtube it
04:31 dferret $wife is staying home. going with $brother
04:32 dferret heehee... gotta get a picture of me on Tabasco street in Tequila
04:32 brunov scratch that then. It'll be weird
04:33 dferret Tebasco, apparently
04:34 brunov Are you visiting all the Mayan ruins and all that?
04:34 brunov like, Techonthilzwhatever?
04:35 dferret no, I think those are way out west
04:35 dferret err, way east sorry
04:36 dferret we're doing tequila, pacific ocean
04:36 dferret map: http://tinyurl.com/ycxha4t
04:37 brunov ahh
04:39 dferret ok, no more computers for today
04:39 dferret g'night!  :)
04:39 brunov o/
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08:52 faceface hello
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17:18 dferret o7
17:22 brunov \o/ <( help! )
17:23 * dferret saves brunov
17:23 brunov :D
17:54 dferret bah. debugging things that take a day to fail is a pain
17:55 brunov like those printers that wouldn't print on tuesdays?
17:55 brunov or it fails after long computation?
17:55 brunov *a long computation?
17:56 dferret this R microarray analysis stuff sometimes runs for 2.5 days then explodes
17:56 dferret so I... uh... need to fix it
17:57 brunov oh, and you can't reproduce the bug with small sample data?
17:58 dferret boy, that'd be nice  :)
17:58 brunov <-- CaptainObvious (sorry)
17:58 brunov I'll go hide now
17:58 dferret i'm not convinced the researcher nor the biostatician is completely grasping The Goal
17:59 dferret biostatistician
17:59 dferret "here, wrestle this elephant"
17:59 dferret dferret: YOU ARE GOOD ENOUGH, YOU ARE SMART ENOUGH, AND GOSH DARN IT, PEOPLE LIKE YOU!
17:59 * dferret perks up
18:00 brunov according to mst, you are not good enough
18:00 dferret he was talking about everyone else
18:00 brunov real talk
18:00 brunov word
18:01 brunov sup
18:17 dferret oh, poo. a grad student has 38K jobs queued
18:18 dferret oh, poo. cluster 2 is in even worse shape   "Firefly is down. Our drive system filled literally overnight."
18:18 dferret rbuels: can I run R on your cluster(s) ?
18:18 rbuels lol
18:18 * rbuels looks
18:19 * dferret laughs
18:19 rbuels it's not very big, only 8 nodes/32 procs
18:19 * dferret spits
18:20 dferret god, I amuse me
18:24 rbuels lol
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18:46 * dferret looks in. the. server. logs. to avoid any ambient wrath
18:47 * rbuels feels wrathful
18:48 rbuels welcome to the sausage factory
18:48 rbuels ;-)
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22:29 biop hello, is this for bioperl help?
22:30 dnewkirk yes
22:31 biop oh okay i have a question on genbank parsing
22:32 biop could you help me out with that?
22:33 dnewkirk Depends. dferret/rbuels are the experts here though
22:33 dnewkirk Whats the issue?
22:33 biop oh okay, basically i was wondering, genbank has this division called gencon which is instructions to reconstruct contigs from genbank files
22:34 biop i was wondering if SeqIO has a parser for this type of genbank file to recontruct the contig sequences
22:37 dnewkirk Not in the released version that I'm aware of, though there may be an addition in the subversion repo that I'm unaware of
22:37 biop oh i see i see, the updated unreleased SeqIO?
22:37 dnewkirk yes
22:38 biop oh ok i'll take a look there, thanks
22:38 dnewkirk sure
22:38 rbuels i highly doubt there's anything for that
22:38 rbuels a grep for the string 'gencon' comes up empty
22:39 biop oh i see, i guess few people have had to use those files
22:41 biop all right, appreciate your help
22:42 biop left #bioperl
23:35 dferret expert? me? chortle  :D
23:35 dferret http://clab.ist.unomaha.ed​u/~dklinkebiel/Graph5.png
23:35 dferret oooo pretty
23:36 dferret rbuels: sorry your sausage FTP is FAIL

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