Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-03-04

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All times shown according to UTC.

Time Nick Message
00:07 deafferret now look what ya did. hostile work environment, so brunov leaves
00:07 rbuels i think you have The Touch
00:07 driveby_bot joined #bioperl
00:07 driveby_bot /home/svn-repositories/bioperl: r16887 (cjfields) : throw error if XML::Twig borks on a parse
00:07 driveby_bot Diff: http://tinyurl.com/yk2fo5q
00:08 deafferret whoah! XML::Twig! woot!
00:30 rbuels i like XML::Twig
00:30 * rbuels has implemented a GenomeThreader parser with it
00:30 rbuels for bioperl
00:30 rbuels but it's not in bioperl, cause it's based on the old bio::seqfeature::annotated
00:30 rbuels and i haven't ported it forward yet
00:39 * deafferret uses XML::Twig constantly, for everything
00:41 deafferret hmm r16887 should use safe_parse() instead...?
00:42 deafferret pyrimiwhateveridine ^^^
00:43 rbuels pyrimograthymine
00:54 brunov joined #bioperl
00:58 deafferret brunov: you get banned yet?
00:58 brunov deafferret, I don't know what the channel *is*
00:59 deafferret exactly. that's step 1 in the getting banned process
00:59 brunov I'd say it's a prerequisite, yeah
01:00 brunov so where could I find this most secretive and intriguing place?
01:00 deafferret brunov: no club jacket for you until you've completed a full banning.
01:01 deafferret as a successfully banned ex-member, I am forbidden to directly assist other ban candidates
01:01 deafferret I am also surprised it's not in your backlog.
01:01 deafferret not that I would prompt you to look there or anything
01:01 deafferret cause I wouldn't
01:01 brunov oh no, FSM forbid!
01:02 rbuels you guys.
01:02 rbuels i swear.
01:02 deafferret indeed. we must all get banned in our time, following standard protocols
01:02 * rbuels shakes his head
01:02 deafferret brunov: he acts like it's not the coolest thing ever to be banned. like me. so that you won't reach nirvana
01:02 deafferret not that I would instruct you in such things
01:03 deafferret or hint at the paradise you're missing being banned from
01:03 deafferret which makes the heart grow fonder still
01:03 brunov My eyes did gaze upon a promising hash-tagged name, but, alas my attempts of entrance to such a misterious digital ballroom were futile
01:03 deafferret oh? perhaps the rbuels communist tyrant fascist dictator has made the channel invite-only
01:04 brunov the nerve!!
01:04 deafferret quite the feat for not having ops, or any friends on this network
01:04 deafferret err... that network
01:04 deafferret I've said too much
01:04 * rbuels falls off his chair
01:04 deafferret brunov: follow him! quick!
01:05 was kicked by deafferret: back home!
01:05 rbuels joined #bioperl
01:05 rbuels fascist.
01:05 deafferret brunov: didja get it?
01:05 brunov I feel dumb now
01:05 deafferret you should have been able to follow his soul vapor trail back from whence he came
01:05 deafferret THERE CAN BE ONLY ONE
01:05 deafferret or ~8, apparently
01:06 brunov I've been enlightened
01:06 deafferret you've entered the inner sanctum?
01:07 brunov my faithful travel aid here is not being too helpful I'm afraid. Sancho X-Chat! Rapido, al canal!
01:07 brunov please excuse him, he's quite raw in his manners
01:07 rbuels lol
01:08 * deafferret turns his enlightened gaze to his 5 other PuTTY windows, laptop
01:08 rbuels PuTTY?
01:08 rbuels eww
01:09 deafferret excellent. all of my spam cannons appear to have aquired rbuels targets. it shan't be long now.
01:09 rbuels omg
01:09 rbuels he's really going to do it
01:10 deafferret Truly, the sweetest 5 words in the Engligh language: "You have been successfully subscribed."
01:10 brunov I did flirt with a beautiful madmoiselle back in my youth days. Irssi was her name, but I could never quite grasp here capricious ways
01:10 brunov I'll shut up now
01:10 deafferret she's silky smooth, and welcoming
01:10 deafferret brunov: yes. please try to stay on topic.
01:10 rbuels do try.
01:11 Topic for #bioperlis now BannedByRBuels2010 has begun! Nopaste your times!
01:17 brunov joined #bioperl
01:21 brunov SUCCESS
01:22 deafferret banned?
01:22 brunov oh no, don't be so hasteful
01:22 brunov patience is a virtue; trolling is a art
01:22 deafferret oh, ok. excellent. like a game of chess.
01:22 * brunov adjusts his monocle
01:23 deafferret lol
01:28 brunov they are not giving me material to work with
01:30 brunov there some suspiciously exotic nicknames there. Ethnic heterogeneity or mere quirkness?
01:31 deafferret ya, it's a war of attrition
01:31 deafferret dunno
01:31 deafferret I never know what anyone was talking about, really, so ...
01:31 brunov fascinating
01:31 deafferret indeed!!
01:32 deafferret you can learn Klingon while you wait
01:32 deafferret to pounce
01:34 brunov LOOK! AN ERUDITE FERRET! http://tinyurl.com/yda9tgf
01:34 deafferret lol
01:37 * deafferret shakes bioperl.org
01:38 * deafferret sighes
01:39 * deafferret finds it hard to believe that uploading this 38K image file asspoloded the wiki
01:40 brunov maybe educated ferrets were not meant to be held captive in wikis
01:40 deafferret :)
01:43 deafferret http://www.bioperl.org/wiki/User:Jhannah
01:45 Topic for #bioperlis now http://www.bioperl.org - You can get help here, but you must be patient.  Paste to http://codepad.org/
01:45 brunov nice
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03:23 driveby_bot /home/svn-repositories/bioperl: r16888 (cjfields) : use safe_parse (deafferret++); tests now run, but fail with EMBOSS 6.2.0
03:23 driveby_bot Diff: http://tinyurl.com/ya3l26z
03:24 deafferret lol  \o/
03:36 * deafferret give rbuels the ole relish foot   http://www.homestarrunner.com/sbemail189.html
03:36 deafferret s
04:27 driveby_bot joined #bioperl
04:27 driveby_bot /home/svn-repositories/bioperl: r16889 (cjfields) : add email prompt for tests requiring it
04:27 driveby_bot Diff: http://tinyurl.com/ydzyjkl
04:32 driveby_bot joined #bioperl
04:32 driveby_bot /home/svn-repositories/bioperl: r16890 (cjfields) : skip tests unless a valid email is provided (now an NCBI requirement)
04:32 driveby_bot Diff: http://tinyurl.com/ycshqzn
04:50 driveby_bot joined #bioperl
04:50 driveby_bot /home/svn-repositories/bioperl: r16891 (cjfields) : [bug 3002] add a bit o' code for email address prompting for tests requiring them
04:50 driveby_bot Diff: http://tinyurl.com/y9vryae
05:23 driveby_bot joined #bioperl
05:23 driveby_bot /home/svn-repositories/bioperl: r16892 (cjfields) : [bug 3012] add a clearer to guarantee clearing the proxy, regardless how the method is called (a bit of code smell there, probably should be refactored to just be used as an instance instead of ambiguously using either class or instance calls)
05:23 driveby_bot Diff: http://tinyurl.com/ycsze8c
05:29 driveby_bot joined #bioperl
05:29 driveby_bot /home/svn-repositories/bioperl: r16893 (cjfields) : partially revert previous commit (mistakenly added untested SF::Generic code to that)
05:29 driveby_bot Diff: http://tinyurl.com/yzarfly
05:37 driveby_bot joined #bioperl
05:37 driveby_bot /home/svn-repositories/bioperl: r16894 (cjfields) : [bug 3018]
05:37 driveby_bot Diff: http://tinyurl.com/yacjsj4
05:42 driveby_bot joined #bioperl
05:42 driveby_bot /home/svn-repositories/bioperl: r16895 (cjfields) : [bug 3019]
05:42 driveby_bot Diff: http://tinyurl.com/ygthm35
05:42 deafferret BUG SMASH!!!
05:55 driveby_bot joined #bioperl
05:55 driveby_bot /home/svn-repositories/bioperl: r16896 (cjfields) : [bug 3121]
05:55 driveby_bot Diff: http://tinyurl.com/ya9oa52
05:57 driveby_bot joined #bioperl
05:57 driveby_bot /home/svn-repositories/bioperl: r16897 (cjfields) : um, that would be bug 3021, not 3121
05:57 driveby_bot Diff: http://tinyurl.com/y8czteb
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13:09 driveby_bot /home/svn-repositories/bioperl: r16898 (maj) : get non-alpha chars in names; thanks Csaba
13:09 driveby_bot Diff: http://tinyurl.com/yc9qdhf
13:12 brandi joined #bioperl
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14:08 brunov joined #bioperl
14:36 driveby_bot joined #bioperl
14:36 driveby_bot /home/svn-repositories/bioperl: r16899 (maj) : get_tiled_alns and tests
14:36 driveby_bot Diff: http://tinyurl.com/ycppt3u
14:39 driveby_bot joined #bioperl
14:39 driveby_bot /home/svn-repositories/bioperl: r16900 (maj) : futz
14:39 driveby_bot Diff: http://tinyurl.com/ycgyfd3
16:33 rbuels deafferret: ping
16:42 driveby_bot joined #bioperl
16:42 driveby_bot /home/svn-repositories/bioperl: r16901 (cjfields) : remote BLAST is timing out when using CDD and rpsblast
16:42 driveby_bot Diff: http://tinyurl.com/ydvsbpg
17:45 driveby_bot joined #bioperl
17:45 driveby_bot /home/svn-repositories/bioperl: r16902 (cjfields) : Add a finite number of attempts for report retrieval
17:45 driveby_bot Diff: http://tinyurl.com/yzmq3qt
17:52 driveby_bot joined #bioperl
17:52 driveby_bot /home/svn-repositories/bioperl: r16903 (cjfields) : [bug 3011] patch for namespace support in SF::Store Pg adaptor
17:52 driveby_bot Diff: http://tinyurl.com/ydn4r2n
18:07 deafferret rbuels: pong
18:08 rbuels deafferret: lol, forgot what i was going to ask you
18:08 rbuels deafferret: i'll remember later, carry on
18:19 deafferret very well. as i was.
18:55 driveby_bot joined #bioperl
18:55 driveby_bot /home/svn-repositories/bioperl: r16904 (cjfields) : [bug 2858] reorder the unpacking of base and trace info (wrong); needs test confirmation
18:55 driveby_bot Diff: http://tinyurl.com/yf7e8wg
18:55 * deafferret clutches rbuels' chest
18:55 rbuels ?
18:56 deafferret driveby joke
18:56 rbuels ooooooh
18:56 rbuels i gets it.
18:56 * deafferret basks in all the hilarity that just ensued
19:13 driveby_bot joined #bioperl
19:13 driveby_bot /home/svn-repositories/bioperl: r16905 (cjfields) : [bug 2869] TODO test for GC issue with trees (edge case)
19:13 driveby_bot Diff: http://tinyurl.com/yho43qz
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