Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-03-26

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All times shown according to UTC.

Time Nick Message
00:30 brunov joined #bioperl
00:34 driveby_bot joined #bioperl
00:34 driveby_bot /home/svn-repositories/bioperl: r16932 (nml5566) : Changed phase in Bio::Tools::GFF::_gff3_string to default to 1. Re-added fixed map_types() to genbank2gff3 converter script.
00:34 driveby_bot Diff: http://tinyurl.com/yz2ah83
06:49 bag joined #bioperl
13:00 brunov joined #bioperl
14:06 brunov joined #bioperl
15:43 deafferret ..o
16:52 kraut_ joined #bioperl
17:58 kraut_ joined #bioperl
19:26 pyrimidine joined #bioperl
19:45 * pyrimidine yawns....
19:46 * deafferret apologizes for boring everyone, cries
19:48 * pyrimidine pats deafferret on the head, drinks beer, laughs
19:49 * deafferret belches. (gassy by association)
19:51 rbuels that was .... an interesting interaction.
19:51 pyrimidine ?
19:52 pyrimidine sorry, that was supposed to be:
19:53 pyrimidine rbuels: ????
19:53 rbuels just the whole patting and belching thing.  it was like ... some kind of performance art.
19:54 * pyrimidine pats rbuels on the head, drinks more beer, laughs
19:57 * pyrimidine thinks whatever inflicts deafferret on #bioperl is catchy
20:08 * deafferret watches as phant sits on rbuels, crushing the belch right out of him
20:09 rbuels git is fast enough to version large datasets
20:09 rbuels i'm versioning the tomato genome annotation release with it.
20:09 rbuels as i tweak things here and there in the data
20:09 deafferret total size is what?
20:10 rbuels 2.8G
20:10 rbuels (uncompressed)
20:10 deafferret wow
20:10 deafferret find the kill-off-in-florida-in-2010-​making-jhannahs-curry-yucky gene, wouldya?
20:10 deafferret annotate the hell out of that one for me
20:10 pyrimidine i use it for the same thing locally
20:11 rbuels it is wonderful.
20:11 pyrimidine I think the initial commit is long, but everything else after that is just fine
20:12 rbuels yeah it take a while to make big commits
20:12 pyrimidine a few here use vcs for their SQL dumps (either git or hg)
20:13 pyrimidine not sure how that handles binary blobs in a database, might be worth testing out
21:11 pyrimidine left #bioperl
22:17 brunov joined #bioperl
22:38 driveby_bot joined #bioperl
22:38 driveby_bot /home/svn-repositories/bioperl: r16933 (nml5566) : fixed noinfer to properly remove inferred mRNAs without also stripping CDS
22:38 driveby_bot Diff: http://tinyurl.com/y8a54vx

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