Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-05-02

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All times shown according to UTC.

Time Nick Message
08:27 bag_ joined #bioperl
09:00 bag_ joined #bioperl
14:34 jhannah ...o.
16:26 fraWii joined #bioperl
16:27 fraWii hi there is someone here?
16:34 jhannah nope, sorry   :)
16:48 fraWii I have to do a project to do multiple alignment and I would like to know if there is a module in bioperl to do a position weight matrix...(pwm) od pssm
16:48 fraWii or.. :P
16:52 jhannah not that I'm aware of. I use clustalw for MSA
16:52 jhannah bioperl is mostly the glue that makes using hundreds of other tools easier
16:52 jhannah most hardcore algorithms are in separate packages
16:56 fraWii yea.. but I have to do everything in Perl.. just a small academic project... to show that I can use perl .. -.-
17:05 jhannah your task is to write an MSA in Perl?
17:10 fraWii yes, using EA to build the pssm...
17:10 jhannah i don't know what EA nor pssm are
17:11 fraWii expectation maximisation and position specific score matrix...
17:11 jhannah sounds like you've got your work cut out for you  :)
17:12 fraWii :P.. I would like to find a perl module that do something similar... just to take inspiration...
17:12 fraWii even if perl is bad to do this I thing,,,
18:01 fraWii left #bioperl
20:00 dave_messina joined #bioperl

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