Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-05-11

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All times shown according to UTC.

Time Nick Message
00:18 abooz jhannah: Did you say that the ### directive of the gff3 file doesn't get resolved, that's why i'm having that error? I can't locate the problem in gff.pm...
00:20 jhannah ### logic is in there, but it separates the groups one line too late
00:28 abooz that i don't see
00:33 jhannah you don't see the effect or you don't see the problem in the sourc code?
00:35 abooz the problem in the source.
00:35 abooz probably have to add some debugging.
00:36 jhannah you do see that it IS behaving that way?
00:40 abooz I see that it is getting a mistake. I don't know why it gets it. I gather it is what you say but i can't locate the problem in the source.
00:40 abooz my perl is bad...
00:41 jhannah k. well, on thr I can try to find it
00:41 jhannah wed the source moves to github, so I kinda want to wait until after that
00:41 jhannah cause I'm skittish
00:43 abooz k
00:52 abooz ok.Got it.
01:09 abooz i need to have a testing repo for bioperl..I can't go around changing files in my main bioperl installation.
02:21 jhannah abooz: you can keep bioperl-live wherever you want and use PERL5LIB to use or stop using it
02:21 jhannah & gnight
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03:47 driveby_bot /home/svn-repositories/bioperl: r16981 (cjfields) : [bug 3073]
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04:13 driveby_bot /home/svn-repositories/bioperl: r16982 (cjfields) : [bug 3058]
04:13 driveby_bot Diff: http://tinyurl.com/2wtcvv7
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14:39 jhannah .o.
15:50 spekki01 .
15:54 abooz is there some ER diagram with the relations of the objects ?I'm still getting confused with which inherits what.
15:58 jhannah wow, that would be nice  :)
15:59 perl_splut deobfuscater helps a bit with that
15:59 perl_splut it shows the methods and where they come from for the various classes
15:59 jhannah somewhere on the wiki ("advanced bioperl"?) there's a page that talks about the Interface philosophy
16:00 perl_splut http://bioperl.org/cgi-bin/deob_interface.cgi
16:12 abooz ah thanks perl_splut, helps a lot.
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17:13 Jun Hi, how can change the bioperl mail list setting to receive every single mail, instead of a digest per day ...
17:14 jhannah Jun: which list? bioperl-l?
17:22 Jun yep
17:22 Jun bioperl-I
17:23 Jun But i cannot find the option to change such setting
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17:24 jhannah Jun: http://bioperl.org/mailman/listinfo/bioperl-l
17:25 jhannah "unsubscribe or edit options"
17:25 jhannah log in, then "Set Digest Mode"  off
17:26 Jun got it. cheers
17:26 jhannah :)
17:29 Jun Just notice that, the BioPerl mail list is "python powered", funny :D
17:29 jhannah MailMan has been the best mailserv for like 10 years now  :)
17:29 jhannah yup, it happens to be written in Python
17:30 Jun yep. it is good. And, it seems there are not so many mails everyday. So it is better to read every mail
17:31 jhannah I never understood why anyone ever wants digest mode. it just makes for bigger, goofy emails
17:32 Jun but in the Bioconductor mail list, there are dozens of mails every day. it is better to keep it digested ...
17:33 jhannah why? you like scrolling down one massive email?
17:33 Jun but it turned out that, i will never read that digest mail, because there are so much information there, and difficult to reply...
17:33 jhannah exactly  :)
17:33 jhannah my theory is people who digest don't actually read anything
17:35 Jun yep
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19:24 driveby_bot /home/svn-repositories/bioperl: r16983 (cjfields) : [bug 3076]
19:24 driveby_bot Diff: http://tinyurl.com/2g55xkw
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21:25 jhannah ...o.
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