Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-05-14

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All times shown according to UTC.

Time Nick Message
00:00 deafferret http://blip.fm/profile/deafferret/blip/442357​60/The+Donnas%E2%80%93Too+Bad+About+Your+Girl
00:03 faceface oh the young fold
00:03 faceface folk
00:03 deafferret \m/   \m/
00:04 rbuels what ... are those
00:04 deafferret WHAT??
00:04 deafferret rbuels: THROW UP YOUR ROCK HANDS
00:05 * deafferret mosh-pits rbuels
00:05 * rbuels looks around for his rock hands
00:05 deafferret lol
00:05 rbuels i seem to have mislaid them
00:05 deafferret you mislay everything   sigh
00:05 rbuels i know it.
00:05 deafferret git add rock_hands.txt
00:05 deafferret git commit; git push
00:05 deafferret sheesh
00:06 * rbuels deletes deafferret's branch
00:06 deafferret rbuels: you must be on an old repo   my branch went poof this morning
00:06 deafferret do try to keep up
00:06 rbuels lol
00:06 * rbuels loves that shit
00:07 rbuels i mean, that stuff.
00:07 rbuels stuff.
00:07 deafferret echo 'git pull ~/src/bioperl-live' >> ~/.bashrc
00:07 * rbuels really does not usually have a potty mouth
00:07 * deafferret nods in agreement
00:07 * deafferret angers not the core dev
00:07 * rbuels squints menacingly
00:43 kyanardag_ joined #bioperl
02:11 deafferret lol
02:26 deafferret http://adambuckman.files.wordpress​.com/2009/12/hi_res36009379_7.jpg
03:41 github joined #bioperl
03:41 github bioperl-live: master Chris Fields * 02657e0 (1 files in 1 dirs): test forking and pull requests - http://bit.ly/bbKECe
03:41 github left #bioperl
03:42 * deafferret mumbles something about those forking pull requests
03:58 deafferret &   gnight
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05:56 github joined #bioperl
05:56 github bioperl-live: refs/archives/branch-ensembl-m1 nobody * b7af73a (0 files in 0 dirs): This commit was manufactured by cvs2svn to create branch ... - http://bit.ly/9maO01
05:56 github left #bioperl
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06:00 github bioperl-live: branch-ensembl-m1 nobody * b7af73a (0 files in 0 dirs): This commit was manufactured by cvs2svn to create branch ... - http://bit.ly/9maO01
06:00 github left #bioperl
06:09 rbuels wow that's weird
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08:33 vinnana joined #bioperl
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11:01 deafferret rbuels: those commits? any idea how that happened?
11:02 deafferret ha.. emails   Date:   2000-01-27 (Thu, 27 Jan 2000)
11:32 cawiss joined #bioperl
11:34 vinnana Hi all. Wrote a small fix plus test for FeatureIO::bed. jhannah suggested me to use github, but there is only read-access! How do I get my changes into the (which) bioperl-live repo?
11:36 vinnana I guess, just using the svn repo (but then the github tip was kind of misleading).
11:56 deafferret vinnana: no, svn is read-only
11:57 deafferret so if you've never committed before then you usually fork the bioperl-live repo, patch your fork, and then send a pull request (which is just a button click inside github)
11:58 deafferret any bioperl-live committer can then git pull in your commit, and if it looks good you'll probably get a commit bit
11:58 deafferret so you can fork or just commit direct next time
11:59 vinnana deafferret: so by "fork" you mean "git clone", or so?
11:59 deafferret there's a button in github that says "fork this repo"
11:59 vinnana Fine, I'll see. Thanks!
11:59 deafferret then you have a new repo --  http://github.com/vinnana/bioperl-live
11:59 deafferret you clone that and change it to your hearts content  :)
12:00 vinnana Aaah! O.k.
12:00 deafferret it's pretty slick -- github maintains your authorship once your commit is pulled into the main repo
12:00 deafferret then the network graph draws you on it and the merge arrows and stuff
12:01 deafferret pretty cool  :)
12:02 deafferret (I am jhannah btw)
12:02 deafferret and/or you could mail the bioperl-l mailing list and ask them to add you as a committer
12:02 deafferret don't know what the "policy" on that is -- we just moved to github on Wednesday  :)
12:03 deafferret I don't control the "bioperl" user on git, so I couldn't grant you commit
12:03 deafferret no matter how awesome your patches are  :)
12:05 vinnana well, currently rather small :-)
12:05 deafferret back in SVN you had to prove your salt with a few good patches before getting a commit bit. I don't know if that bar will be lowered to brand new people on github... I've been told it's insanely easy to roll back in git, but I've never done it
12:05 deafferret vinnana: size does not matter   ;)
12:05 deafferret welcome!
12:05 vinnana :-)
12:06 deafferret &  commute. back in an hour or so
12:31 vinnana done!
12:32 vinnana Now back to my group meeting talk ...
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12:59 deafferret ..o..                ?
13:04 deafferret vinnana++ # pull request  :)
13:05 deafferret vinnana: that email went out to the bioperl-guts-l mailing list, which is all committers
13:05 deafferret very cool
13:05 * deafferret wonders if someone is looking at it yet
13:06 deafferret git++ github++
13:11 vinnana me to :)
13:12 vinnana I guess so, most are in u.s.?
13:12 * deafferret wonders if he should
13:12 deafferret GMT-5 here
13:12 * deafferret clocks out to look at it
13:13 vinnana so you're in u.s. as well
13:13 vinnana i'm in the netherlands
13:13 deafferret :)
13:15 vinnana appears that cjfields tested the fork and pull request just some hours ago
13:19 deafferret lets see if my notes are good enough  :)   http://jays.net/wiki/Git
13:24 deafferret ew, my git client is old over here
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13:34 github joined #bioperl
13:34 github bioperl-live: master pkensche * 8ac5f4d (2 files in 2 dirs): fixed wrong interpretation of locations in bed files; added a test file plus tests for this - http://bit.ly/c4NrGg
13:34 github left #bioperl
13:36 deafferret vinnana: added a commit note/question
13:36 deafferret neatio
13:36 deafferret looks like somebody else merged it
13:38 vinnana great!
13:38 vinnana well, that was a premier
13:39 deafferret huh... I don't know how to know who merged it...
13:39 deafferret everything looks like YOU did  :)
13:39 deafferret you're the author, which is great, but it'd be nice to see who was behind the curtain just then
13:43 vinnana true, in particular when the number of people with commit rights increases
13:43 vinnana which it is supposed to, or not?
13:46 deafferret I don't know. My recent ideas about git policies have not be universally popular, so who knows what the policies will end up being  :)
13:47 vinnana what were your recent ideas?
13:47 deafferret oh... nevermind   or look at the bioperl-l archives  :)
13:47 * deafferret is just being fussy
13:48 * deafferret lets it go
13:48 deafferret again  :)
13:48 deafferret I can find NOWHERE which says who pushed your code in
13:48 deafferret fascinating
13:49 deafferret I assume there's server logs deep in the bowels of github which track IP and SSH keys and what-not, but I don't think users can see those
13:49 * deafferret shrugs
13:49 deafferret did you get emails from my 2 comments?
13:49 pyrimidine joined #bioperl
13:50 * deafferret waves
13:50 pyrimidine deafferret: o/
13:50 deafferret pyrimidine: did you merge vinnana?
13:50 pyrimidine yep
13:50 deafferret is there anywhere to see that it was you?
13:50 pyrimidine forgot to add a merge message
13:50 deafferret "merge message?"   -ponder-
13:50 pyrimidine http://github.com/guides/pull-requests
13:50 pyrimidine it's a simple merge
13:51 deafferret I was being pendantic about indention. :)
13:51 deafferret pedantic?
13:51 pyrimidine git checkout master
13:51 pyrimidine git merge vinanna/master
13:52 pyrimidine you can add a message to the merge step with -m
13:52 deafferret hmm, my notes create a new vianna-merge branch and such   http://jays.net/wiki/Git
13:52 pyrimidine something like, 'signed off by so-and-so'
13:52 vinnana you mean the indentation -- sorry for that, I just used indent-region in my emacs (bad habit)
13:53 * deafferret shrugs
13:53 deafferret vinnana: did github send you emails when I added comments in github?
13:53 pyrimidine no, went to me
13:53 pyrimidine b/c I made the commit, not vinanna
13:54 vinnana i didn't get any emails from github
13:54 deafferret vianna made the commit in github/vinanna, which I commented
13:54 deafferret hmm
13:54 pyrimidine yes, but the comment was on bioperl's repo, not vinanna's fork
13:54 deafferret (2 comments, one in /vinanna, one in /bioperl)
13:55 pyrimidine the one to vinanna should have been received on vinanna's end, then
13:55 deafferret pyrimidine: the first comment I made was in vinanna/bioperl-live, the second in bioperl/bioperl-live
13:55 deafferret ya
13:55 deafferret shiny toy fail
13:55 deafferret :)
13:55 pyrimidine s'okay
13:55 pyrimidine wfm
13:55 vinnana you mean "notes on the commit"?
13:56 pyrimidine yes
13:56 pyrimidine deafferret: see my reply on list?
13:57 vinnana ok -- it just failed?
13:57 pyrimidine oh, gotta catch my ride in.  back in a bit.
14:00 deafferret vinnana: what just failed?
14:04 Jun joined #bioperl
14:05 deafferret vinnana: so anyhoo, when py<TAB> gets back you can ask him to add you as a committer
14:06 deafferret if that's how we're going to roll
14:06 vinnana who is pyrimidine
14:06 deafferret bioperl.org/wiki/IRC
14:06 deafferret add yourself  :)
14:08 vinnana i'll add me after some commits
14:10 deafferret i'll be really impressed if you can add yourself  :)
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14:40 faceface anyone use Graph::Easy?
14:40 faceface need to put a node at a specific point (in GDL)
14:41 faceface there is no loc attribute, and setting x or y has no effect
14:41 deafferret GDL?
14:41 faceface or pos
14:41 faceface Graph Description Linguini
14:41 faceface http://www.absint.com/aisee/gdl/nutshell/
14:42 faceface http://search.cpan.org/~tels/Gr​aph-Easy-0.64/lib/Graph/Easy.pm
14:42 faceface (do you see what I did there?)
14:42 deafferret :)   no, I've never used those
14:46 faceface hrm
14:53 faceface The priority of an edge corresponds to the strength of the imaginary rubberband.
14:54 faceface but Graph::Easy won't let me set it :-(
15:36 deafferret py<TAB>++ # diplomacy
15:49 vinnana i'm off. CU
15:50 deafferret o7
15:50 vinnana left #bioperl
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19:15 spekki01 test
21:22 rbuels pyrimidine, if you're around, i'm looking at branches ....
21:38 deafferret don't do it! there be dragons!

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