Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-06-05

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All times shown according to UTC.

Time Nick Message
00:32 CIA-95 bioperl-run: DaveMessina master * r09151b6 / lib/Bio/Tools/Run/StandAlon​eBlastPlus/BlastMethods.pm : bug 3091 - patch courtesy of Dimitar Kenanov - http://bit.ly/cArEpa
00:35 CIA-95 bioperl-live: Robert Buels topic/longest_orf * r4ce6366 / Bio/Tools/CodonTable.pm : added comment with the bases used in the codon table columns, makes it much easier to understand their layout - http://bit.ly/aYaflh
00:35 CIA-95 bioperl-live: Robert Buels topic/longest_orf * r06fe978 / Bio/PrimarySeqI.pm : more sane (maintainable) format for translate() option documentation - http://bit.ly/bOUZmn
00:35 CIA-95 bioperl-live: Robert Buels topic/longest_orf * r3db3025 / Bio/PrimarySeqI.pm : another translate() docpatch for better rendering on search.cpan.org - http://bit.ly/bDXlVS
00:35 CIA-95 bioperl-live: Robert Buels topic/longest_orf * r6fe8afb / Bio/PrimarySeqI.pm :
00:35 CIA-95 bioperl-live: tweaked translate() args format, removed -longest_orf arg, instead making the
00:35 CIA-95 bioperl-live: -orf arg do double duty, with "longest" triggering the longest_orf behavior, and
00:35 CIA-95 bioperl-live: other true values finding the first ORF (for backcompat) - http://bit.ly/919UlG
00:39 CIA-95 bioperl-live: DaveMessina master * rd1937b2 / MANIFEST : updating MANIFEST to correspond to change in 6444b22 - http://bit.ly/cxWC3t
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01:20 CIA-95 bioperl-live: DaveMessina master * r50e62b4 / t/Align/Graphics.t : added test requirement/skip for GD so no longer errors out; now using Bio::Root::Test. - http://bit.ly/bZHiIJ
01:36 CIA-95 bioperl-live: DaveMessina master * r6ea85d2 / t/Assembly/Assembly.t : updating test count for tests added in 48d9789 - http://bit.ly/9mCNqZ
01:46 CIA-95 bioperl-live: DaveMessina master * rb4fb809 / (Bio/SearchIO/blast.pm t/SearchIO/blast.t): patch for Bug 3090, courtesy of Razi Khaja. New tests, even. Woo hoo! Thanks, Razi. - http://bit.ly/bsjEpo
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13:30 CIA-95 bioperl-live: Chris Fields master * rb6f2b3c / Bio/Tools/EUtilities.pm : get_replaced_terms<- (courtesy Peng Yu) - http://bit.ly/9LxEsx
13:30 CIA-95 bioperl-live: Chris Fields master * rb5f9183 / .gitignore : add MYMETA.yml, any *.bak files - http://bit.ly/9yVQvP
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