Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-06-10

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All times shown according to UTC.

Time Nick Message
01:15 russellsmithies joined #bioperl
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17:21 CIA-94 bioperl-live: Chris Fields master * r6e11034 / Bio/Tools/Run/WrapperBase/CommandExts.pm : Ben's changes to fix bug with file, along with comment and link on possible concerns - http://bit.ly/9DAf6d
17:28 CIA-94 biome: Chris Fields master * r292ff47 / (4 files in 4 dirs): a bit further along on parsing locations - http://bit.ly/9on4XL
18:10 deafferret ..o.o....o.O
18:14 pyrimidine joined #bioperl
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18:23 ffoertter joined #bioperl
19:13 CIA-94 biome: Chris Fields master * ra3293b0 / (4 files in 4 dirs): more updates -
19:17 dave_messina joined #bioperl
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20:13 CIA-94 bioperl-live: Lincoln Stein master * r33075eb / (47 files in 28 dirs): Merge branch 'master' of git@github.com:bioperl/bioperl-live - http://bit.ly/aZD8pm
20:13 CIA-94 bioperl-live: Lincoln Stein master * rd737515 / scripts/Bio-SeqFeature-Sto​re/bp_seqfeature_load.PLS : seqfeature store database loader turns on summary statistics on new database creation - http://bit.ly/bpeZAU
20:17 deafferret r bad
20:25 dave_messina what was the solution for avoiding this big merge branch 'master' problem?
20:25 kblin rebase
20:26 kblin or "git rebase origin/master"
20:26 * deafferret freebases
20:26 dave_messina ah right, thanks. So is the procedure we have on the Using Git page wrong?
20:26 kblin uh, I have to admit I didn't read that
20:26 kblin but if it's doing a git pull, it might be wrong
20:27 kblin you want to fetch/rebase
20:27 dave_messina 'cause I'm surprised this didnt' come up sooner after we switched to git
20:27 dave_messina kblin: would you mind taking a look at that page if you've got a minute? and fixing it if it's wrong?
20:28 kblin er, sure, I might have some time tomorrow, kind of busy right now
20:28 dave_messina yeah, yeah, no problem.
20:29 * dave_messina shamelessly takes advantage of those more knowledgeable than him. :)
20:30 perl_splut "If I have seen farther than anyone before, then that is because I have stood on the shoulders of giants"
20:31 deafferret http://bioperl.org/wiki/Using_​Git#Processing_a_Pull_Request seems to be the relevant section
20:31 dave_messina brb
20:32 deafferret hmm.... or does the merging master phenom also happen with commit-bit accounts working locally?
20:33 deafferret s/commit-bit accounts/collaborator/
20:39 dave_messina joined #bioperl
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22:42 pyrimidine joined #bioperl
22:44 pyrimidine deafferret: yes, we should change 'Using git' from 'git merge' -> 'git rebase'
22:49 pyrimidine bah, incoming t-storm.  Gotta mow the yard (ack that sounds bad).
22:50 pyrimidine afk
22:50 perl_splut what's a t-storm?
22:53 dave_messina it's what comes right before a u-storm
22:54 perl_splut sounds bad. better turn off the cluster to stop it from happening
22:54 pyrimidine thunderstorm (tornadoes and such)
22:55 perl_splut never heard of them, but then we get 350 days of sun each year
22:55 pyrimidine I'm in the midwest, we get hammered by bad weather this time of year.  Was in Texas at one point (not much different, but the winters were nicer)
22:56 pyrimidine *midwest US, if that weren't obvious
22:56 perl_splut sorry, was making a bad joke
22:56 perl_splut where I live we have 2 seasons and a step change in the temp and that is almost it for the entire year
22:57 perl_splut goes from < 80 one week to over 100 the next and stays there for 3 months, then steps back down to < 80 in a week
23:01 pyrimidine perl_splut: where are you?
23:01 deafferret any objections to me adding geography to the wiki/IRC list?
23:03 deafferret maybe sort #Regulars by GMT offset  :)
23:03 dave_messina deafferret: yeah that'd be cool
23:03 pyrimidine good idea
23:03 deafferret roll call: GMT offset, city/state/country
23:03 deafferret -6 Omaha, NE USA
23:04 deafferret role call?
23:04 deafferret roll i think
23:04 pyrimidine mmm, cinnamon roll
23:05 dave_messina +1, Stockholm, Sweden
23:05 * pyrimidine -6 Champaign, IL USA
23:05 deafferret is gonna wiki table this w/o objection
23:06 pyrimidine possible mine will change soon
23:06 deafferret pyrimidine: it's a wiki!!  :D
23:06 pyrimidine very true
23:07 dave_messina where to, Chris?
23:08 pyrimidine possibly CA
23:09 pyrimidine won't know for certain for a short bit more
23:09 dave_messina if it happens, sweet! would be a nice change. I love CA
23:10 pyrimidine very nice change from central IL
23:10 pyrimidine so, fingers crossed!
23:11 dave_messina yep, for sure. good luck, man.
23:11 dave_messina I've been trying to move to CA for like 10 years. Kinda going in the wrong direction. :)
23:13 pyrimidine yeah, but europe is a nice direction to move towards
23:16 dave_messina true, I shouldn't complain. I'm enjoying it.
23:18 deafferret I think I like the table. thoughts?  http://bioperl.org/wiki/IRC#Regulars_on_IRC
23:18 deafferret hmm... $work[0] does tables with sort buttons. not sure if that's a plugin or what
23:19 pyrimidine I think that's a plugin; thought it was working
23:19 * pyrimidine probably thinking about my local wiki
23:19 deafferret pyrimidine: shouldn't you be mowing something?  :)
23:19 deafferret table: good? bad?
23:19 pyrimidine I'm hoping the storm passes south of us; having a lazy day
23:20 deafferret telekenisis mowing. very cool  :)
23:20 pyrimidine table: good
23:20 deafferret the "aye"s have it
23:21 * pyrimidine wondering if the overhead of MooseX::Types outweighs the benefits
23:25 * deafferret hasn't used it
23:26 pyrimidine using it in Biome, but considering removing it
23:28 deafferret dave_messina: unles you object I'm adding you to the list
23:29 dave_messina deafferret: no objection here. thanks.
23:29 deafferret dave_messina: what IRC client do you use?
23:30 dave_messina Colloquy
23:31 deafferret k. added. now fishing for other peoples geography via user links
23:33 dave_messina aww, it'd be more fun if you just made them up.
23:33 deafferret :)
23:35 dnewkirk rbuels is in Botswana
23:35 dnewkirk :)
23:35 deafferret GMT offset?   ;)
23:35 pyrimidine -24
23:36 dave_messina kblin +7 Ulan Bator
23:36 deafferret "Ulan bator" is a place?
23:36 pyrimidine rbuels is located in first circle of hell, aka Portland, OR
23:37 dave_messina well, Ulaanbaatar if you prefer.
23:37 * pyrimidine in the seventh circle
23:37 * pyrimidine had Ulaanbaatar once, it was painful
23:37 deafferret dave_messina: I have no preference for things I don't understand  :)
23:37 dave_messina :)
23:39 dave_messina http://bit.ly/bf5zeW
23:40 deafferret lol  http://bioperl.org/wiki/User:Majensen first sentence
23:40 deafferret whoah.... he did all that since 2008? I'm such a slacker
23:42 deafferret I think I've run out of info
23:42 deafferret without more serious sluthing
23:42 deafferret slutheing?
23:44 dave_messina hmmph. Some stalker you are.
23:44 dave_messina Can't even narrow 'em down to a time zone.
23:44 deafferret well, if people want to be kinda anonymouse I'm fine with that
23:44 deafferret or fictional
23:44 deafferret anon a mouse
23:44 deafferret moose!
23:45 dnewkirk joined #bioperl
23:45 * deafferret stalks dnewkirk
23:45 deafferret (class="sortable")++
23:45 dnewkirk deafferret: bored much? :)
23:45 dave_messina like I said, just make it up then. :) It's a wiki. We can see how long it takes them to change it.
23:46 deafferret dave_messina: good idea!
23:46 deafferret dnewkirk: http://bioperl.org/wiki/IRC#Regulars_on_IRC
23:46 dnewkirk ahhh
23:47 deafferret ooo... the sorting is case insensitive too. nice
23:48 pyrimidine huh, CIA bot's not here
23:49 dave_messina pyrimidine: yep, timed out or something a little while ago.
23:49 diconzine joined #bioperl
23:50 pyrimidine don't know if you need an account to see it, but here it is:
23:50 pyrimidine http://cia.vc/account/bots/17973/
23:53 deafferret dave_messina: all done. ptl is my favorite
23:53 dave_messina pyrimidine:  yep, it's behind a login screen, unfortunately.
23:53 diconzine anyone knows how to do something like 'put the same value $line[7] at line 145 to $line[2] at line 178'?
23:53 diconzine @_@
23:54 dave_messina deafferret: sweet! I'd never heard of Sealand.
23:54 deafferret dave_messina: been a couple years since I've read up about it. not sure what it's current status is  :)
23:54 pyrimidine diconzine: this is #bioperl.  That question belongs on #perl-help
23:54 deafferret they were an ISP for a while
23:55 deafferret irc.perl.org #perl-help
23:55 deafferret kai is in Mongolia? really? wow
23:55 pyrimidine Jun is in Dublin
23:56 diconzine pyrimidine oh sry.. actually i was about to use it in TSS's genome analysis :O
23:56 diconzine but i will ask there brb
23:57 * pyrimidine confused
23:58 diconzine my doubt is not 'directly' about bioperl, but bioperl is the ultimate goal
23:58 diconzine lolz
23:58 diconzine just a minute
23:59 deafferret pyrimidine: User:Jun doesn't exist, so I'm not adding him
23:59 pyrimidine np

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