Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-07-05

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All times shown according to UTC.

Time Nick Message
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15:13 CIA-95 bioperl-live: Chris Fields master * re785d82 / (Bio/DB/EUtilities.pm Bio/Tools/EUtilities/EUtilParameters.pm): add some significant milestones - http://bit.ly/97W7Z2
16:07 faceface megablast -> gff?
16:13 CIA-95 bioperl-run: Chris Fields master * r03e09b9 / lib/Bio/Tools/Run/Infernal.pm : small fixes, but the previous code does work when setting INFERNALDIR - http://bit.ly/a6GaPz
16:25 faceface does /some/o mean 'treat /some/ as compiled and unchanging'?
16:25 faceface http://perldoc.perl.org/perlfa​q6.html#What-is-/o-really-for?
16:25 faceface OK, it's not needed here
17:31 faceface anytips on running megablast?
17:31 faceface I ran with -m8 -D0, but the result is kinda weird
17:31 faceface can bioperl parse them all?
17:39 kblin dunno, try it?
17:48 faceface http://www.bioperl.org/wiki/Searchio
17:48 faceface Format 2 should be parseable as standard BLAST output.
17:49 faceface but 0 is listed as a sub format
17:49 faceface Bio::SearchIO::megablast - a driver module for Bio::SearchIO to parse megablast reports (format 0) ??
17:52 faceface cool, seems to work
19:25 CIA-95 bioperl-run: maj master * r4908bb2 / MANIFEST : remove samtool cruft from MANIFEST - http://bit.ly/bxu8pa
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