Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-07-07

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All times shown according to UTC.

Time Nick Message
00:41 kblin joined #bioperl
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07:57 faceface spekki0: not used it
09:14 kai spekki0: what's your problem?
09:15 kai spekki0: I've switched to blast+ a while ago, apart from the command being called differently, it works pretty much like the old tool
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15:29 spekki0 kai you around, sry for not replying sooner to your response.
15:47 kblin spekki0: sure, no worries
15:48 spekki0 hi, so im having some trouble just configuring blast+
15:49 spekki0 im pretty sure i got my fasta file converted to a blast db usming makeblastdb
15:49 spekki0 but now im trying to figure out the .ncbirc file to configure stuff
15:50 spekki0 cause i want to be able to have a php script call the command but i keep getting the error "BLAST Database error: No alias or index file found for protein database"
15:51 spekki0 and I think that's a setting in the config file, where im supposed to point it to the right directory for my blast db's but I dont think im doing it write.
15:53 spekki0 which setting deals with that stuff is it DATA_LOADERS, or BLASTDB_PROT_DATA_LOADER cause maybe im just not understanding what the manual says about them.
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18:29 CIA-95 bioperl-live: Heikki Lehvaslaiho master * r0fe0648 / Bio/Location/Simple.pm : Clarify warnings when defaulting the value of end() - http://bit.ly/cKLemU
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21:47 kblin spekki0: did you create the correct type of database? :)
21:50 spekki0 hi, yes i got myselft a protein blast db
21:50 spekki0 i ended up just using pull paths to everything in my blastp command so it works
21:51 spekki0 i gave up on the config file lol
21:53 kblin ah, I think I still set the BLASTDB env var

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