Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-07-16

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All times shown according to UTC.

Time Nick Message
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02:30 deafferret Wow. Cool job not requiring a PhD  :)     http://careers.crijob.com/lbnlcare​ers/detailsRedirect.asp?jid=24680
04:12 CIA-95 bioperl-live: Chris Fields master * r2a240f6 / Bio/Search/HSP/GenericHSP.pm : [bug 3107] pass strand info to alns - http://bit.ly/9Uemy3
04:12 CIA-95 bioperl-live: Chris Fields master * r9ec5047 / t/RemoteDB/Taxonomy.t : remote data change; make test more flexible - http://bit.ly/bDqsOA
04:12 CIA-95 bioperl-live: Chris Fields master * rd741467 / t/LocalDB/SeqFeature.t : tests skipped off by 3, fixed - http://bit.ly/buNxai
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15:24 rbuels pytab++ # lmgtfy.com
15:37 deafferret ..o.O.. .
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16:17 Jun Hi, rbuels. Has Chris submited my midterm evaluation form? I just want to check that, so I wont miss the mid-term payment :-P
16:18 * rbuels is looking ...
16:21 rbuels Jun: i can't seem to tell from the web app whether he has done it
16:21 * rbuels raises his arms in the air and sends a telepathic summons to pyrimidine
16:21 rbuels Jun: he may answer in a little while
16:21 Jun Ok, cool
16:22 rbuels Jun: probably you should just email him thouhg
16:22 rbuels Jun: it would be more reliable
16:22 Jun yep, that is better
16:28 pyrimidine joined #bioperl
16:29 pyrimidine Jun: yes, I have done it (the survey)
16:30 rbuels Jun: also, i have figured out where to view the evals in the web app
16:30 rbuels Jun: and i can confirm that pyrimidine is not lying
16:30 rbuels not that he lies.
16:30 Jun Ok, cool. Thx to you guys :D
16:30 rbuels much.
16:30 rbuels ;-)
16:30 Jun I should say I really enjoyed that
16:31 Jun I really enjoyed this summer project
16:32 Jun the web app is good so far. I have already written a few simple methods to retrieve information from Pfam, using Bio::DB::GenericWebAgent
16:32 Jun And, also a few other package, e.g. LWP::UserAgent and URI
16:32 Jun It works well so far, so next week, I will make them into a package
16:39 pyrimidine Jun: sounds like you're on target pretty much.
16:39 pyrimidine Been having a conversation with the Bio* community about an integrated way of dealing with SAM/BAM as well.
16:40 pyrimidine Pjotr Prins wants to create a common set of SWIG-based bindings to Samtools
16:40 pyrimidine will see how that goes
16:41 Jun Ok, sounds interesting
16:42 Jun I will get a few essential methods from Bio::SimpleAlign to Bio::Align::AlignI later. These methods may also be used in Bio::Assembly later.
16:47 Jun I have to go now. Talk to u later. Have a nice weekend :D
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20:46 pyrimidine frig, I'm building rmblast for repeatmasker and it's taking fuck=long
20:46 pyrimidine *fuck-long :)
20:47 deafferret tsk tsk
20:47 * deafferret thought he was the potty mouth 'round here and py<tab> was above such nonsense
20:47 pyrimidine yeah, but it's friday afternoon, wanted to get this done and then have a beer
20:47 deafferret guess I'm the moral compass now
20:48 pyrimidine the build is delaying my brew!
20:48 deafferret \o/   come, seek my wisdom, my children
20:50 pyrimidine ah, done, after about 30 minutes
20:50 * deafferret predicted that
20:53 * rbuels waves at pytab
20:53 pyrimidine o/
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21:38 CIA-95 bioperl-live: Chris Fields master * r566e134 / (Bio/Seq.pm Bio/Seq/RichSeq.pm Bio/Seq/RichSeqI.pm): [bug 3095] doc changes to indicate difference between version and seq_version; remove mention of seq_version from Bio::Seq (method is in RichSeq) - http://bit.ly/b0foq9
21:41 pyrimidine off to the bar! o/
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