| Time |
Nick |
Message |
| 05:56 |
|
bag_ joined #bioperl |
| 10:03 |
|
bag_ joined #bioperl |
| 11:53 |
dbolser |
beep beeep beep beep beep thud |
| 11:55 |
dbolser |
can I call 'has_tag' on a Contig? |
| 14:21 |
dbolser |
why is so.org down? |
| 14:21 |
* dbolser |
banks his fist heavily on the #bioperl conference table |
| 14:25 |
* genehack` |
settles back in to deafferret's #3120... |
| 14:59 |
dbolser |
linky? |
| 15:17 |
dbolser |
OMG... its full of buts |
| 16:06 |
* genehack |
reaches closure and sits down to write up the bad news for deafferret |
| 16:25 |
|
burmas joined #bioperl |
| 16:27 |
dbolser |
what inherits SeqFeatureI? |
| 16:34 |
genehack |
a whole bunch of stuff, but not Bio::SeqFeature::Lite |
| 16:36 |
* dbolser |
tries to think of a funny way to say... what stuff? |
| 16:36 |
dbolser |
grep -r summut bioperl-live |
| 16:53 |
* genehack |
hates it when writing up the summary of why the bug can't be fixed shows you what you need to do to fix the bug |
| 17:01 |
* dbolser |
resets genehack |
| 17:16 |
dbolser |
I think a contig and a scaffold should also be featureI complient, based on the data in their associated 'main feature' |
| 17:17 |
* dbolser |
detaches |
| 17:29 |
genehack |
*headdesk* on the up side, it's fixable. on the downside, this is fugly. |
| 17:30 |
genehack |
naptime for the offspring; back later... |
| 18:17 |
genehack |
dbolser: it looks like Bio::Assembly::Contig does use a Bio::Assembly::SeqFeature::Collection to store stuff internally, but I don't think that means the config object is going to be SeqFeatureI-compatible. |
| 18:17 |
genehack |
<--- fairly noob-ish, though. |
| 18:36 |
genehack |
deafferret: I think 3120 is fixed -- see mailing list -- but would appreciate any confirmation you can offer. |
| 18:42 |
genehack |
rbuels: i haven't heard anything back from MAJ on #3088, so if there's anything else you'd like me to poke at, feel free to let me know. |
| 19:06 |
genehack |
otherwise i'll try to start working through old stuff in the bug list and see how much trouble i can stir up. 8^) |
| 19:06 |
CIA-94 |
bioperl-live: John SJ Anderson master * r3a03b23 / scripts/Bio-DB-GFF/genbank2gff3.PLS : silence exception that happens with -y option - http://bit.ly/cPnxao |
| 19:08 |
* genehack |
does the happy-patch-accepted-dance |
| 19:29 |
|
bag_ joined #bioperl |
| 20:31 |
deafferret |
..o.OO___|\ |
| 20:39 |
genehack |
o_O |
