Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-08-30

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
01:02 brandi1 joined #bioperl
01:02 brandi1 left #bioperl
01:03 brandi1 joined #bioperl
01:03 brandi1 left #bioperl
07:49 bag_ joined #bioperl
09:31 bag_ left #bioperl
10:40 kai left #bioperl
10:41 kai joined #bioperl
11:36 kai hi folks
11:37 kai I'm trying to iterate over a a bunch of SeqFeatures from an EMBL file, trying to parallelize some number crunching using Parallel::ForkManager
11:38 kai but weird things happen if I actually use multiple threads on the SeqFeatures
11:38 kai any pointers on how to correctly do this?
12:17 carandraug joined #bioperl
12:54 jhamilton joined #bioperl
13:38 driley left #bioperl
13:43 driley joined #bioperl
14:03 deafferret left #bioperl
14:20 deafferret joined #bioperl
14:25 deafferret left #bioperl
15:13 perl_splut sounds like a good use of the Queue
15:14 perl_splut have one thread read in the file and then have it queue the different seqfeatures for the other threads to play with
15:15 perl_splut those threads put their finished changes on another queue which a final thread reads through to perform the merger of the features back into the main object
15:55 kblin well, it actually looks like the threads keep changing each other's SeqFeatures
15:58 perl_splut well, can't help much without seeing code
15:59 kblin sure
15:59 kblin I'll have to look at this again tomorrw
17:21 deafferret joined #bioperl
18:31 deafferret .o.oo.o.o.
18:59 dnewkirk Happy Monday everyone ;)
19:09 ank joined #bioperl
19:25 deafferret woot!
19:28 perl_splut ?
19:28 deafferret Monday! woot!
19:31 perl_splut 4 day weekend coming up
19:31 perl_splut lots of time to relax and enjoy myself
19:36 * deafferret whips perl_splut
19:36 deafferret ROW FASTER
19:36 perl_splut zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz
19:38 perl_splut I work smarter, not harder. Helps me get more zzz's
19:38 deafferret "work"   laugh
19:38 deafferret that's what you call that?
19:38 deafferret ;)
19:38 perl_splut that's what I call running a script I've written and going to get a soda and sandwich
19:39 deafferret mmmmmm sammich
19:41 dnewkirk 4 day weekend?
19:42 perl_splut yep
19:42 deafferret Labor Day!  Where we celebrate labor by.... avoiding it.
19:42 deafferret (pssst... we're morons)
19:43 perl_splut makes up for those of us that work 80+ hours a week... heheh
19:43 perl_splut thank go that isn't me
19:43 deafferret who's doing 80?
19:43 perl_splut I'm an hourly wage slave
19:44 perl_splut most of the grad students here are around till 8 or 10 pm each night and here on the weekends...
19:44 deafferret they need to find lazier advisors
19:45 dnewkirk Yeah, see, I'm one of those grad students...
19:46 dnewkirk It's more by choice however. My advisers are probably more sensible than I.
19:49 dnewkirk There's too much to learn.
19:50 perl_splut and the more you learn, the more you find there is to learn...
19:50 deafferret perl_splut++
19:50 deafferret it's a fools game, really.   ;)
19:50 * deafferret is dumb and happy
19:50 perl_splut ignorance truly is bliss
21:53 bag_ joined #bioperl
22:38 carandraug left #bioperl
23:03 bag_ left #bioperl

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary