Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-08-31

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All times shown according to UTC.

Time Nick Message
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00:49 CIA-95 bioperl-live: John SJ Anderson topic/bug-2701 * r2ac26bf / (Bio/AlignIO/mummer.pm Bio/Align/mummer.pm):
00:49 CIA-95 bioperl-live: move Bio::AlignIO::mummer to proper location
00:49 CIA-95 bioperl-live: pointed out by Dan Kortschak in email -- thanks again Dan. - http://bit.ly/a6KTlD
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12:25 Topic for #bioperl is now http://bioperl.org/wiki/IRC#Getting_help | http://www.bioperl.org/wiki/Using_Git | paste to http://pastebin.com/
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15:40 perl_splut 1.6.1 has a lot of errors when installing under strawberry perl
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17:30 * deafferret suppresses his knee-jerk windows? fail? sarcasm
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17:31 * deejoe expects most of the failures would have been due to lack of supporting apps.
17:33 * deafferret votes for "lack of Linux"
17:36 deejoe heh
17:40 perl_splut sigh...
17:45 deafferret :)
17:49 deejoe perl_splut: so, any insights as to the nature of the errors?
17:50 perl_splut one sec. let me pull up the log file
18:01 perl_splut weird... couldn't find the log, so went to rebuild it from command-line and now it is trying to install quite a few packages beyond just BioPerl... like CPAN missed a bunch of dependencies
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20:52 kblin speaking of perl on windows, is there a trick to install 64bit activestate perl on 64bit win7?
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21:07 dnewkirk No
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21:15 perl_splut t/Align/AlignStats.t ......................... 1/43 Replacement list is longer t
21:15 perl_splut han search list at Bio/Range.pm line 251.
21:16 perl_splut t/AlignIO/emboss.t ........................... 1/37 Subroutine _initialize redef
21:16 perl_splut ined at Bio\AlignIO\emboss.pm line 93.
21:16 perl_splut Use of uninitialized value in lc at Bio/Assembly/Contig.pm line 1143, <GEN0> lin
21:16 perl_splut e 412.
21:17 perl_splut are some of the errors that go past
21:17 perl_splut Use of uninitialized value $type in lc at Bio\Location\Split.pm line 118.
21:18 perl_splut t/LocalDB/Registry.t ......................... 3/14
21:18 perl_splut --------------------- WARNING ---------------------
21:18 perl_splut MSG: This Perl doesn't implement function getpwuid(), no $HOME
21:18 perl_splut --------------------------​-------------------------
21:22 perl_splut t/RemoteDB/Taxonomy.t ........................ UNIVERSAL->import is deprecated a
21:22 perl_splut nd will be removed in a future perl at Bio/Tree/TreeFunctionsI.pm line 94
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21:29 deafferret boo! no pasting!
21:29 deafferret gist.github.com is your friend
21:33 perl_splut the damage is done... I'll try to remember that for next time
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23:13 deafferret :)
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