Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-09-29

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All times shown according to UTC.

Time Nick Message
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15:23 dbolser so I'm making a schema diagram for seqFeature store...
15:23 dbolser how does 'name' work?
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16:33 * pyrimidine can't believe deafferret didn't know about blogs.perl.org
16:34 pyrimidine even I knew about it, and I'm a crotchety old dude
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16:51 dbolser blog?
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17:18 pyrimidine http://blogs.perl.org/users/jhannah_mutation_grid/
17:19 pyrimidine and mine: http://blogs.perl.org/users/pyrimidine/
17:19 pyrimidine dbolser: ^^^^
17:30 dbolser pyrimidine: ty
17:31 dbolser pyrimidine: can you explain the name table in seqFeat?
17:31 dbolser pyrimidine: re http://www.bioperl.org/wiki/Mod​ule:Bio::DB::SeqFeature::Store
17:31 dbolser (kind of ugly, but ...)
17:31 deafferret pyrimidine: what's a "blog"?   crazy kids
17:32 dbolser deafferret: a blog is like a massive tweet
17:32 pyrimidine deafferret: it's like that twitter thing, but for those of us who write in complete sentences
17:32 pyrimidine :)
17:32 deafferret dbolser: oh! I get it. I twatter all the time.
17:33 deafferret ("all the time" meaning 6 or more times a year)
17:33 pyrimidine that's probably more then me
17:33 dbolser just imagine a non-central place where you concat about 150 tweets in one go...
17:33 deafferret THAT'S INSANE!!
17:33 dbolser I tweet every 6 to 10 minutes
17:33 dbolser http://twitter.com/rettiwwitter
17:34 pyrimidine crazy how technology progresses
17:34 deafferret 140 characters is the scientifically proven most space any worthwhile set of ideas needs for expression
17:34 dbolser 104
17:34 deafferret dbolser: sounds like you're the reason I don't twitter much  :)
17:34 deafferret dbolser: ALL   YOUR    FAULT
17:35 dbolser come on!
17:35 deafferret ruinin' the intertubes
17:35 dbolser I've got 11 followers!!
17:35 deafferret still? after all that abuse?
17:35 dbolser I used to use that account to tweet my shell
17:35 deafferret lol
17:35 dbolser srsly ;-)
17:35 dbolser if you go back about 10k pages you see shell output
17:35 deafferret an excellent use of time, all around
17:35 * dbolser likes to experiment
17:36 pyrimidine re: name table, looks like it's a way to distinguish a Name attribute from Aliases
17:37 dbolser wouldn't name / alias just get an attribute code in the attributelist table?
17:37 deafferret pyrimidine: please try to stay off topic. this is clearly #notbioperl
17:38 dbolser ashktually... how does it cope with multiple aliases?
17:38 pyrimidine Alias is there, but I don't see Name
17:38 dbolser pyrimidine: I see names in my attribute table... or I did
17:39 dbolser select * from pot_qa_attributelist;
17:39 dbolser +----+-----------+
17:39 dbolser | id | tag       |
17:39 dbolser +----+-----------+
17:39 dbolser |  1 | load_id   |
17:39 dbolser |  2 | Note      |
17:39 dbolser |  3 | NAME      |
17:39 dbolser |  4 | Alias     |
17:39 dbolser |  5 | Target    |
17:39 dbolser |  6 | parent_id |
17:39 pyrimidine NAME != Name
17:39 dbolser +----+-----------+
17:39 pyrimidine sorry. NAME ne Name
17:39 dbolser oops
17:39 pyrimidine :)
17:39 dbolser prolly why I got fuzed
17:39 * dbolser greps his GFF
17:39 deafferret gross
17:40 dbolser you can't talk!
17:40 pyrimidine It may be something set up for optimized lookups
17:40 dbolser do you think the way I've drawn it is OK?
17:40 deafferret dbolser: I pay others to grep my GFF, thank you.
17:40 dbolser I've seen you grocking your feats
17:40 deafferret as God intended
17:41 * deafferret notices that adding "as God intended" makes anything funnier
17:41 * dbolser agrees
17:41 dbolser like your women
17:41 pyrimidine at least he's not grokking his feets
17:41 pyrimidine then he would have to pay double
17:43 dbolser What is the record for wanting to type something uppercase, then hitting caps locks, then either pressing shift or not so as to get the case wrong?
17:43 dbolser and hitting caps lock again
17:44 deafferret that has _never_ happened
17:44 dbolser :-(
17:45 dbolser I'm clearly in the company of people beyond my puny intellect
17:45 dbolser How comes this fails? http://gmod.org/wiki/GBrowse_Popup​_Balloons#Linking_back_to_GBrowse
17:48 pyrimidine dunno, haven't tried it
17:55 dbolser unaseptable
17:55 dbolser [Wed Sep 29 18:49:55 2010] [error] [client 10.0.3.23] Use of uninitialized value in concatenation (.) or string at /homes/www-potato/perl5/lib/perl5/x86_64-linux-t​hread-multi/Bio/Graphics/Browser2/Render/HTML.pm line 150.
18:01 dbolser sorry, that is just my null examples string
18:01 dbolser $searchform.$self->examples();
18:16 deafferret in what environment does that syntax work?
20:28 arcsine is anyone here familiar with fgenesh output?
20:31 deafferret dbolser: ^^
20:31 deafferret arcsine: nope. wazzat?
20:33 arcsine it's an orf caller/gene prediction tool
20:35 deafferret haha.... test failed
20:35 deafferret #          got: '0'
20:35 deafferret #     expected: '0'
20:35 arcsine o0
20:36 deafferret pretty cool, huh?
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