Camelia, the Perl 6 bug

IRC log for #bioperl, 2010-10-06

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All times shown according to UTC.

Time Nick Message
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15:04 kai ha, two hmmer3 parser bugs fixed
15:04 * kai pushes while noone is looking
15:06 CIA-95 bioperl-live: Kai Blin master * r5d928ae / (Bio/SearchIO/hmmer3.pm t/SearchIO/hmmer3.t):
15:06 CIA-95 bioperl-live: Bio::SearchIO::hmmer3: Fix the hmm and query start/stop positions
15:06 CIA-95 bioperl-live: While writing the tests I misunderstood the values in the hmmer output. Fixed the tests to test for the correct values, fixed the parser to report the correct values. - http://bit.ly/9nTv8V
15:06 CIA-95 bioperl-live: Kai Blin master * r002d1e6 / (Bio/SearchIO/hmmer3.pm t/SearchIO/hmmer3.t):
15:06 CIA-95 bioperl-live: SearchIO::hmmer3: Correctly parse out aligments
15:06 CIA-95 bioperl-live: The hmmer3 parser failed to correctly parse out the hit sequence, the
15:06 CIA-95 bioperl-live: conservation sequence and the query sequence from alignments.
15:06 CIA-95 bioperl-live: Fixed bug #3136 - http://bit.ly/d7mcw9
15:07 * kai whistles nonchalantly
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