Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-02-15

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All times shown according to UTC.

Time Nick Message
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14:37 pyrimidine rbuels: should look at niecza: https://github.com/sorear/niecza
14:37 pyrimidine Perl6 targeting CLR
14:38 pyrimidine There is a push for JVM as well
14:39 pyrimidine not to mention some significant parrot optimizations are on the horizon (next few months), will have a signicant performance increase
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20:15 dnewkirk A DDoS attack?
20:15 dnewkirk Why?
20:22 pyrimidine dnewkirk: DDoS?
20:22 dnewkirk The global notice
20:22 dnewkirk or, well, perhaps it's the server I connected to
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21:58 DeniseM Hey all.  I have genomic coordinates for hg18 (0 based half open) and I want to get the genes that are near that position.  Is there a way in BioPerl to do this?
22:01 pyrimidine DeniseM: I would import everything into a Bio::DB::SeqFeature::Store database, then use the various methods to query for nearby genes.
22:01 pyrimidine within a defined window
22:02 pyrimidine unfortunately, I'm heading home
22:02 DeniseM ok, I'll look at that module
22:04 DeniseM I was hoping that I could use Bio::DB::EntrezGene to do it, but it seems like it only works the other way round (going from gene id to coord)
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