Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-02-28

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
02:59 mzgrideng joined #bioperl
04:52 mzgrideng left #bioperl
06:38 melic left #bioperl
06:39 melic joined #bioperl
06:58 jon__ left #bioperl
07:13 jon__ joined #bioperl
08:03 jon__ left #bioperl
09:06 jon__ joined #bioperl
09:23 jon__ left #bioperl
13:46 zenman joined #bioperl
13:55 zenman left #bioperl
14:50 mzgrideng joined #bioperl
16:07 mzgrideng left #bioperl
17:01 pyrimidine rbuels: ping
17:05 rbuels pyrimidine: pong
17:06 deafferret TABLE TENNIS DAMMIT!
17:06 rbuels eesh, sorry
17:06 rbuels you're right, it shows a lack of respect for the sport
17:07 deafferret how many years must we suffer under this oppressive yoke?!
17:07 * rbuels swears on chairman mao
17:10 pyrimidine rbuels: testing out Dist::Zilla on Bio::FeatureIO.  Know of any way to create a stub Build.PL for anyone downloading the distribution?
17:10 rbuels pyrimidine: you mean devs who don't know how to use dzil?
17:10 pyrimidine yes
17:10 pyrimidine well, maybe.
17:11 rbuels pyrimidine: you're trying to support the use case of users of bioperl who are updating it via version control checkouts?
17:11 pyrimidine in a general sense, yes
17:11 rbuels pyrimidine: this common practice is an artifact of BioPerl's broken release cycle.
17:11 pyrimidine right, but this is something Moose has also run into
17:12 rbuels ?
17:12 * rbuels was not aware of that
17:12 pyrimidine there is a default Makefile.PL in the Moose github repo
17:12 rbuels in that dzil is a barrier to people downloading the dev version?
17:12 * rbuels looks
17:12 * deafferret lools
17:13 rbuels and github's search is broken.
17:13 * rbuels sighs
17:13 rbuels there it is
17:13 pyrimidine http://git.shadowcat.co.uk/gitweb/g​itweb.cgi?p=gitmo/Moose.git;a=tree
17:14 rbuels weird
17:14 pyrimidine there is also a .shipit
17:14 pyrimidine I think the dist.ini is for the transition to Moose v.2
17:16 * rbuels asks about it in #moose
17:22 pyrimidine asked and answered
17:23 rbuels pyrimidine: you can probably just steal that Makefile.PL wholesale
17:24 pyrimidine rbuels: problem is, we've already pounded into devs heads we're using Build.PL
17:24 rbuels pyrimidine: that was like 3 years ago wasn't it?
17:24 rbuels (or more?)
17:24 pyrimidine or so
17:25 rbuels that's a lot of years.
17:25 ank joined #bioperl
17:26 pyrimidine yes, and they've now become accustomed to 'perl Build.PL' for builds, tests, etc.  Trying to get everyone to migrate to prove
17:26 pyrimidine will be a PITA
17:26 pyrimidine and the last thing I want to do is make it harder for devs to run tests
17:27 pyrimidine (it's already hard to get them to run them prior to massive commits)
17:27 dbolser who pinged?
17:27 dbolser (three weeks is a long time in #bioperl)
17:28 pyrimidine dbolser: no idea.  maybe check the logs?
17:28 pyrimidine http://irclog.perlgeek.de/bioperl/
17:29 dbolser ty
17:29 dbolser lordy
17:29 dbolser can I search them all on one big timeline?
17:29 * dbolser does that
17:30 dbolser Thats weird... is there a netsplit?
17:30 dbolser or did I plonk PerlJam?
17:31 dbolser ch_: dbolser probably isn't around right now, but he'll probably see your messages when he's around next
17:32 dbolser ch_
17:32 dbolser <ch_> rbuels, yes it was actually a long time ago ( some month) since we chatted about swissknife.
17:32 dbolser cool
18:12 zenman joined #bioperl
18:23 zenman left #bioperl
18:23 mzgrideng joined #bioperl
20:58 rdesfo joined #bioperl
22:07 CIA-44 bioperl6: takadonet master * rc41b508 / (lib/Bio/Tools/CodonTable.pm t/Tools/CodonTable.t): Converted most of test code to p6 code. Implemented half dozen method stubs that return 'NYI' - http://bit.ly/dPOw6i
23:08 mzgrideng left #bioperl
23:08 ank left #bioperl
23:12 mzgrideng joined #bioperl
23:13 ank joined #bioperl
23:38 CIA-44 bioperl6: takadonet master * r8e40cf9 / lib/Bio/Tools/CodonTable.pm : added default value for attribute 'id' - http://bit.ly/hinMqB
23:38 CIA-44 bioperl6: takadonet master * rf336449 / t/Tools/CodonTable.t : added description to test - http://bit.ly/hVyM25
23:38 CIA-44 bioperl6: takadonet master * raf7d54b / lib/Bio/Tools/CodonTable.pm : implemented first version of method name - http://bit.ly/ghEAxE
23:38 CIA-44 bioperl6: takadonet master * r6e33532 / lib/Bio/Tools/CodonTable.pm : spelling mistake - http://bit.ly/f4ojuS
23:38 CIA-44 bioperl6: takadonet master * rc550241 / (lib/Bio/Tools/CodonTable.pm t/Tools/CodonTable.t): added more attributes,build codon hash table, basic translate working however no ambigious chars alllowed yet - http://bit.ly/edg8sV
23:39 deafferret whozat?
23:52 mzgrideng left #bioperl

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary