Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-03-13

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
02:39 dnewkirk_ left #bioperl
02:43 CIA-57 bioperl-live: Chris Fields master * ra81e18f / Bio/DB/SeqFeature/Store/memory.pm : squash warning - http://bit.ly/i6Go2o
02:50 bag_ left #bioperl
02:50 CIA-57 bioperl-live: Chris Fields master * ra8c109d / Bio/Assembly/IO/sam.pm : commented out accidentally uncommented code - http://bit.ly/gEI6Io
02:50 CIA-57 bioperl-live: Chris Fields master * r9cda9c3 / Bio/Assembly/IO/ace.pm : use 'ace' as the default source, make sure that undef values are not used (this should probably be cleaned up, should we have possibly undef source here?) - http://bit.ly/dH8cFX
04:28 CIA-57 bioperl-live: Chris Fields master * r597808b / Bio/SeqIO/seqxml.pm : squash XML::Writer issue, still get a warning though - http://bit.ly/hkBMnY
04:28 CIA-57 bioperl-live: Chris Fields master * re9d49ea / t/Root/RootI.t : use Test::Exception methods exported from Bio::Root::Test - http://bit.ly/e1QEYl
04:28 CIA-57 bioperl-live: Chris Fields master * r8e493d2 / Bio/DB/SeqFeature/Store/memory.pm : a bit more perl 5.12 warning squashing - http://bit.ly/fuK0Fe
04:39 CIA-57 bioperl-live: Chris Fields master * re4e70a6 / (Bio/Root/Root.pm t/Root/RootI.t): make exception messages match whether one has Error.pm installed or not - http://bit.ly/hAsA71
04:44 CIA-57 bioperl-live: Chris Fields master * r4b69c5e / t/Map/Map.t : volatile data broke test - http://bit.ly/hIpiAg
04:48 CIA-57 bioperl-live: Chris Fields master * r7fabbfd / t/RemoteDB/CUTG.t : fix CUTG skipped test count - http://bit.ly/hCokbp
05:21 CIA-57 bioperl-live: Chris Fields master * re7c4300 / Bio/Tree/TreeFunctionsI.pm : reduce warning message, was overly verbose and gave warnings when nodes didn't have a defined name - http://bit.ly/e8WGye
05:27 CIA-57 bioperl-live: Chris Fields release-1-6-2 * re7c4300 / Bio/Tree/TreeFunctionsI.pm : reduce warning message, was overly verbose and gave warnings when nodes didn't have a defined name (+92 more commits...) - http://bit.ly/e8WGye
05:37 CIA-57 bioperl-live: Chris Fields release-1-6-2 * rb67875a / Bio/SeqIO/seqxml.pm : within_element works better - http://bit.ly/i6GyI4
05:44 CIA-57 bioperl-live: Chris Fields master * r52e52e6 / Bio/SeqIO/seqxml.pm : within_element works better - http://bit.ly/fJW5hn
06:11 CIA-57 bioperl6: takadonet master * rca72bbb / lib/Bio/Role/Location/Split.pm : implemented sub_Location and max_end. Passing more tests - http://bit.ly/hJWPCU
06:11 CIA-57 bioperl6: takadonet master * r5b0f6ac / lib/Bio/Role/Location/Split.pm : implemented min_start - http://bit.ly/g8gaE4
06:11 CIA-57 bioperl6: takadonet master * r2ea5fac / lib/Bio/Role/Location/Simple.pm : implemented to_FTstring for Role Simple - http://bit.ly/hUbDAF
06:11 CIA-57 bioperl6: takadonet master * rcd3cf2a / lib/Bio/Role/Location/Fuzzy.pm : implemented to_FTstring for Fuzzy Role. Added new package hash as well. - http://bit.ly/hMT1uq
06:11 CIA-57 bioperl6: takadonet master * r05796a7 / (3 files in 3 dirs):
06:11 CIA-57 bioperl6: Changed strand attribute to prviate so split can override getter/setter. Added
06:11 CIA-57 bioperl6: flip_strand method to Role Location. Added splittype attribute, implemented
06:11 CIA-57 bioperl6: to_FTstring, flip_strand , guide_strand and it's own strand getter/setter .
06:11 CIA-57 bioperl6: Passing almost all to_fstring test for all Location types. Changed tests to
06:11 CIA-57 bioperl6: reflect new api. - http://bit.ly/h6M9cO
06:33 bag_ joined #bioperl
07:52 cassj joined #bioperl
08:54 cassj left #bioperl
13:18 bag_ left #bioperl
13:24 bag_ joined #bioperl
20:53 bag_ left #bioperl
21:05 bag_ joined #bioperl
22:03 bag_ left #bioperl

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary