Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-03-19

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Time Nick Message
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18:27 dbolser what do you guys use to compare two sequence sets for insertions / deletions / rearangements ?
18:27 dbolser I am trying dnadiff in MUMmer, but it's results are sparse
18:27 dbolser it tells me about 1k changes, but refuses to let me know where / why they have been induced
18:28 dbolser similarly, the two sequene sets I'm comparing are generated by comparison of a reference based and a denovo assembly
18:29 dbolser I'd like to visualize them all in the context of the (highly fragmented) reference assembly... any tips on a good data structure to facilitate this?
20:36 CIA-60 bioperl6: takadonet master * re0e4b1d / (lib/Bio/Role/Location.pm lib/Bio/Role/Location/Fuzzy.pm):
20:36 CIA-60 bioperl6: Attribute start and end are now private to allow for multi setter/getter methods
20:36 CIA-60 bioperl6: in the future. Change Location.pm new so we do not destroy original parameters.
20:36 CIA-60 bioperl6: Added submethod BUILD for Fuzzy. Got fuzzypointdecode working for a few cases. -
20:36 CIA-60 bioperl6: http://bit.ly/ed9wCI
21:30 CIA-60 bioperl6: takadonet master * r565dd79 / lib/Bio/Role/Location/Split.pm : implemented max_start and min_end for Split Role - http://bit.ly/hnpwjH
21:39 CIA-60 bioperl6: takadonet master * ra3070fc / (lib/Bio/Role/Location/Split.pm t/Location.t): Added a desc to test file. Implemented a slow but working start and end methods for Split. - http://bit.ly/gdoniO
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