Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-03-21

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All times shown according to UTC.

Time Nick Message
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14:59 rbuels dbolser: too hard.  pick a different field.
14:59 * rbuels chuckles
15:06 dbolser I beg your pudding?
15:06 dbolser refactoring bp?
15:23 dbolser oh, my question I guess... yup
16:09 deafferret http://www.theonion.com/audio/national-​science-foundation-science-hard,12747/
16:54 dbolser can someone help me understand this alignment? http://pastebin.mozilla.org/1188891
16:56 dbolser It's like there is an uneven repeat in the middle of contig00018/contig01040
16:56 dbolser and it's a ligning as far as it can in both directions ... I think
16:59 dbolser schematic of what I think is happening .... http://pastebin.mozilla.org/1188892
17:00 dbolser or it's r1, r2, r3 in contig00018 and just r1, r2 in contig01040 ... perhaps
17:01 rbuels ugh
17:07 deafferret http://www.theonion.com/audio/national-​science-foundation-science-hard,12747/  :)
17:07 * deafferret is extremely f'n helpful  :)
17:11 * dbolser slaps rbuels around a bit
17:11 dbolser bleah... home time
17:11 dbolser I'll lurk
17:12 dbolser let me know what additional information you would like
17:13 dbolser I'm comparing de-novo to reference based assemblies, and seeing quite a few weirdness
17:13 dbolser translocations and compressed duplicates, but this one is 'compression' in both sequences... apparently
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