Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-04-04

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All times shown according to UTC.

Time Nick Message
00:02 CIA-119 bioperl6: takadonet master * r99cc13f / (2 files in 2 dirs): implemented get_all_values method and uncommented the test for it. - http://bit.ly/hPFhi2
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03:01 CIA-119 bioperl-live: Chris Fields master * r0adfeb0 / Bio/Tools/Run/RemoteBlast.pm : add patch that fixes #3190, courtesy Ali Walsh - http://bit.ly/f3BOtj
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03:19 CIA-119 bioperl6: takadonet master * r64d84b8 / (4 files in 3 dirs):
03:19 CIA-119 bioperl6: renamed Collects.pm to AnnotationCollectionI so we can use the role. The role is
03:19 CIA-119 bioperl6: mostly just a shell so we have a common interface for Collection objects. Added
03:19 CIA-119 bioperl6: attribute and method tagname to Collection.pm with also another multi method
03:19 CIA-119 bioperl6: add_Annotation. Passing more tests as well. - http://bit.ly/gBGToi
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03:30 CIA-119 bioperl-live: Chris Fields master * r13813c2 / README : test hook, fingers crossed - http://bit.ly/gmmvW7
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03:39 CIA-119 bioperl-live: Chris Fields master * r983fb37 / README : test hook - http://bit.ly/fFcfpM
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03:47 CIA-119 bioperl-live: Chris Fields master * r5e4f151 / README : test hook - http://bit.ly/fDTRGS
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14:20 CIA-119 bioperl-live: Chris Fields master * r536fd50 / (Bio/Tools/SeqStats.pm t/SeqTools/SeqStats.t): use residue count for calcs instead of length, fixes bug #3185 - http://bit.ly/fKolhK
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14:22 CIA-119 bioperl-live: Chris Fields master * r5e4f151 / README : test hook - http://bit.ly/fDTRGS
14:22 CIA-119 bioperl-live: Chris Fields master * r983fb37 / README : test hook - http://bit.ly/fFcfpM
14:22 CIA-119 bioperl-live: Chris Fields master * r536fd50 / (Bio/Tools/SeqStats.pm t/SeqTools/SeqStats.t): use residue count for calcs instead of length, fixes bug #3185 - http://bit.ly/fKolhK
14:24 pyrimidine that took a bit
14:30 CIA-119 bioperl-run: Chris Fields master * r08f7bed / README : test hook from run (issue might be CGI params) - http://bit.ly/gRtuwp
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15:15 CIA-119 bioperl-run: Chris Fields master * ra84af49 / README :
15:15 CIA-119 bioperl-run: Revert "test hook from run (issue might be CGI params)"
15:15 CIA-119 bioperl-run: This reverts commit 08f7bed77c612b141babe9843bd98843f5916d7e. - http://bit.ly/f6cTVU
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16:16 CIA-119 bioperl-live: Chris Fields master * rd74316b / README : test hook again (anyone getting annoyed by this yet?) - https://github.com/bioperl/bioperl-live/comm‚Äčit/d74316b08135d7bce1138daad3aa958c781163b6
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16:24 CIA-119 bioperl-live: Chris Fields master * r1794d2c / README :
16:24 CIA-119 bioperl-live: Revert "test hook again (anyone getting annoyed by this yet?)"
16:24 CIA-119 bioperl-live: This reverts commit d74316b08135d7bce1138daad3aa958c781163b6.
16:24 CIA-119 bioperl-live: and also fixes #3189 - https://github.com/bioperl/bioperl-live/comm‚Äčit/1794d2c20ff7a9ef8ff64a01dd1be7733f4a9112
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18:30 CIA-119 bioperl-live: Chris Fields master * r2244ab4 / (3 files in 3 dirs): potential fix for bug #3172, but needs to be checked for performance - http://bit.ly/fPiYkN
18:45 CIA-119 bioperl-live: Chris Fields master * r8888364 / Bio/DB/Fasta.pm : rework to optimize a bit, again for bug #3172 - http://bit.ly/gvRj2V
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21:15 CIA-119 bioperl-live: Chris Fields master * r5c15956 / (3 files in 2 dirs): sizes() now allows for a Bio::Restriction::EnzymeI (with tests), fixes #3157 - http://bit.ly/ghjtHH
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21:43 CIA-119 bioperl6: takadonet master * rb694a48 / (lib/Bio/Annotation/Collection.pm t/Annotation/Annotation.t): implemented get_all_Annotation method. Passing more tests - http://bit.ly/fbpGU2
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21:58 CIA-119 bioperl6: takadonet master * rc7d482c / (2 files in 2 dirs): Added attribute tagname and methods for StructuredValue.pm. Passing more tests - http://bit.ly/fHEkeV
21:58 CIA-119 bioperl6: takadonet master * rfd7a55c / (3 files in 2 dirs): Implemented remove_Annotation and flatten_Annotations methods. Uncommented p6 code in TypeManager. Made %type attribute into a public one for now in TypeManager. Passing more tests. - http://bit.ly/dQjpYz
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