Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-07-13

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All times shown according to UTC.

Time Nick Message
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07:16 CIA-72 bioperl-live: Florent Angly master * r8dec0ef / (Bio/Seq/SimulatedRead.pm t/Seq/SimulatedRead.t): Fixed issue when adding MID to a simulated read that already has a MID - http://bit.ly/qO2G1p
07:16 CIA-72 bioperl-live: Florent Angly master * rf71e5de / (Bio/Seq/SimulatedRead.pm t/Seq/SimulatedRead.t): Fixed an edge case when introducing errors in the last bases of a simulated read with MID - http://bit.ly/pnjr89
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17:55 Interface Hey, can BioPerl be used in conjunction with phpmysql?
17:55 Interface to query the genbank?
17:56 Interface I'm interested in doing something like this -> Generate a phylogenic tree from entries in a mysql database
17:56 rbuels Interface: phpmysql?  i'm not familiar with that
17:56 Interface php/mysql
17:56 rbuels Interface: well, you can get data out of a mysql database
17:57 Interface alright
17:57 rbuels Interface: but BioPerl is written in perl.  not php.
17:57 Interface I know ;)
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17:58 jhannah php could execute bioperl scripts for you I supose
17:59 Interface yeah, I was wondering though, can it generate phylogenic trees?
17:59 Interface from the data extracted from GenBank
18:01 jhannah hmm  http://www.bioperl.org/wiki/HOW​TO:PhylogeneticAnalysisPipeline
18:02 jhannah also  http://www.bioperl.org/wiki/HOWTO:Fe​ature-Annotation#The_Species_Object
18:02 Interface cool
18:03 Interface I think it would be a fun project to get an automatically generated phylogenic tree from database info
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