Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-08-03

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All times shown according to UTC.

Time Nick Message
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02:35 zorino hi everyone I have a little problem when a parse a genbank file with protein translation in the annotation or features of the sequence, the /translation="MGACTYYY.." of the protein should appear the last one after /product /note and so on but it's not the case ...
02:36 zorino so for a CDS the /translation feature appeared in the middle of the qualifiers
02:39 zorino is my question enough clear ?
02:39 zorino and my writing ...
03:45 jhannah zorino: you should probably put your source code and results on gist.github.com or similar
03:46 jhannah and/or post to the bioperl-l mailing list
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08:15 kai zorino: is the translation being the last element a required part of the genbank file format? I'm pretty sure a lot of programs violate this
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08:39 kai zorino: is the translation being the last element a required part of the genbank file format? I'm pretty sure a lot of programs violate this (in case you missed what I said before)
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12:02 zorino kai: no it's not required for a valid genbank file, I don't know yet if it's required for the submission though
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18:35 CIA-72 bioperl-live: Kai Blin hmmer-bug3264 * re8aed06 / (Bio/Root/IO.pm t/Root/RootIO.t):
18:35 CIA-72 bioperl-live: Root::IO: Make the readbuffer a stack, not a FIFO
18:35 CIA-72 bioperl-live: Signed-off-by: Kai Blin <kai.blin@biotech.uni-tuebingen.de> - https://github.com/bioperl/bioperl-live/comm​it/e8aed06b6ca3d724a29d7ab20a3bfb3e05d79818
18:35 CIA-72 bioperl-live: Kai Blin hmmer-bug3264 * rcabf288 / (4 files in 2 dirs):
18:35 CIA-72 bioperl-live: SearchIO::hmmer: correctly handle format determination on non-seekable filehandles
18:35 CIA-72 bioperl-live: This fixes bug #3264.
18:35 CIA-72 bioperl-live: Signed-off-by: Kai Blin <kai.blin@biotech.uni-tuebingen.de> - https://github.com/bioperl/bioperl-live/comm​it/cabf288444addbbf947e6986cc57da897c2e86d0
18:38 kblin god, am I important :)
18:50 rbuels totally
18:54 jhannah :)
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21:15 kblin aha
21:16 kblin for some reason redmine thinks that no matter what branch I push to, "fixes bug #" means the bug is closed :/
21:30 jhannah software sucks   ;)
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