Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-08-17

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
00:57 zenman_ joined #bioperl
01:55 svaksha joined #bioperl
03:38 zeropointo joined #bioperl
06:04 zeropointo joined #bioperl
06:56 zenman__ joined #bioperl
06:59 zenman joined #bioperl
07:28 zeropointo joined #bioperl
10:47 zeropointo joined #bioperl
14:04 zenman__ joined #bioperl
17:56 jessicajames joined #bioperl
17:57 jessicajames What's the easiest way to find out which lines (aka elements) in  PDB file are considered to be the protein's "backbone"?
18:36 jessicajames Actually, I'm assuming there's a module in bioperl which calculates RMSD, given two PDB files (and automatically aligns the backbone before performing the calculation), right?
18:53 zeropointo joined #bioperl
19:02 jessicajames Finally found it: http://pdbwiki.org/index.php/PDB_FAQ#Q:_How_ca​n_I_calculate_the_RMSD_between_two_structures.3F
19:04 jessicajames joined #bioperl
19:43 CIA-72 bioperl-live: Robert Buels reorganization_2.x * r74e586e / (Bio/DasI.pm Bio/Range.pm Bio/RangeI.pm):
19:43 CIA-72 bioperl-live: Revert "Added missing DasI, Range and RangeI pm files"
19:43 CIA-72 bioperl-live: This reverts commit e1f277302537d28e7f243a4e19f67595f3b24af1. - http://bit.ly/oRMwvh
19:43 CIA-72 bioperl-live: Robert Buels reorganization_2.x * r6e15df1 / Bio/Root/Build.pm : add Bio::Root::Build back, I accidentally deleted it - http://bit.ly/n4Npbn
19:51 CIA-72 bioperl-live: Sheena Scroggins reorganization_2.x * r8d3d058 / Build.PL : Updated Build.PL - http://bit.ly/paZhVf
19:54 pyrimidine joined #bioperl
19:54 pyrimidine trVstno1
19:55 pyrimidine heh
20:05 sheenams joined #bioperl
20:17 scottcain joined #bioperl
20:18 CIA-72 bioperl-live: Robert Buels master * r7e8e7f9 / scripts/seq/bp_extract_feature_seq.pl : POD syntax fix - http://bit.ly/orehgH
20:19 pyrimidine thanks for that, sir
20:19 pyrimidine may I have another?
20:19 pyrimidine (bug fix)
20:20 rbuels heh
20:36 scottcain joined #bioperl
20:40 CIA-72 bioperl-live: Sheena Scroggins reorganization_2.x * r77d8089 / (12 files in 2 dirs): Remove Bio::Coordinate - http://bit.ly/rjdxYG
20:48 CIA-72 bioperl-live: Florent Angly reorganization_2.x * rf19e16b / (Bio/Seq/SimulatedRead.pm t/Seq/SimulatedRead.t): Bio::Seq::SimulatedRead can be specified redundant errors - http://bit.ly/qYtD96
20:48 CIA-72 bioperl-live: Robert Buels reorganization_2.x * r3b857d8 / scripts/seq/bp_extract_feature_seq.pl : POD syntax fix - http://bit.ly/pIEBrK
21:15 CIA-72 bioperl-live: Sheena Scroggins reorganization_2.x * rd7aba27 / (4 files): Remove Bio::Coordinate tests - http://bit.ly/riEPjG
21:15 CIA-72 bioperl-live: Sheena Scroggins reorganization_2.x * r32fa2c3 / (3 files in 3 dirs): Merge branch 'reorganization_2.x' of github.com:bioperl/bioperl-live into reorganization_2.x - http://bit.ly/qIQhZ6
21:34 pyrimidine joined #bioperl
23:07 CIA-72 bioperl-live: Sheena Scroggins reorganization_2.x * r10e668d / (4 files): Remove Bio::Coordinate tests - http://bit.ly/qgDj3N
23:07 CIA-72 bioperl-live: Robert Buels reorganization_2.x * rafbdf1c / t/SearchIO/hmmer.t : warning squash - http://bit.ly/qYH2Hw
23:07 CIA-72 bioperl-live: Robert Buels reorganization_2.x * r6308bda / (3 files in 3 dirs): Merge branch 'master' of github.com:bioperl/bioperl-live into reorganization_2.x - http://bit.ly/pO5JRJ
23:44 CIA-72 bioperl-live: Robert Buels master * r37856ef / Bio/DB/SeqFeature/Store/DBI/mysql.pm : comment out some stray debugging code - http://bit.ly/nfChNy

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary