Camelia, the Perl 6 bug

IRC log for #bioperl, 2011-10-13

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
02:01 sizz joined #bioperl
02:02 sizz left #bioperl
04:18 dukeleto joined #bioperl
04:19 dukeleto joined #bioperl
10:11 Kaske joined #bioperl
10:19 Kaske if i have a feature with segments, how can i access each subfeatures start and end coordinates and put it into display_name like: "10-100|300-500|550-600|..."?
11:16 CIA-42 bioperl-live: Florent Angly  * rc8fe212 / Bio/Seq/SimulatedRead.pm : Handle empty reference sequence description more gracefully - http://git.io/f8zq_g
11:16 CIA-42 bioperl-live: Florent Angly  * r416a408 / (Bio/SimpleAlign.pm t/Align/SimpleAlign.t): Merge branch 'master' of github.com:bioperl/bioperl-live - http://git.io/VhL1OQ
12:51 deafferret Kaske: did you find it?
12:53 deafferret Kaske: http://www.bioperl.org/wiki/HOWTO:Fea​ture-Annotation#Getting_the_Features
12:53 carandraug joined #bioperl
12:53 deafferret errr... actually you might want to look at the *Location* stuff
12:54 deafferret depending on ...  i'll stop now since you might be gone  :)
12:54 deafferret and/or done  :)
13:20 Kaske im here, i'll take a look :) thanks
14:01 deafferret have you looked at the docs for Bio::Location::SplitLocationI ?
14:02 deafferret perhaps that's what you're looking for?
14:02 deafferret the SYNOPSIS ?
14:24 dukeleto joined #bioperl
14:33 CIA-42 bioperl-run: Brian Osborne  * r14712c6 / (lib/Bio/Tools/Run/Phylo/Phyml.pm t/Njtree.t): Add option for MPI, all tests pass - http://git.io/3X1KBQ
14:35 Kaske hmm... im not sure its what i needed as i already have the fragments as individual Bio::SeqFeature::Generic elements and combining them through another Bio::SeqFeature::Generic->new(-segments = [@features])
14:41 Kaske i might have attacked the problem from the wrong angle, can anyone point me in the right direction on how I can get my info from -tags from my features into the "-link" in a Bio::Graphics track?
14:44 Kaske gotta relog, brb
14:48 Kaske^ joined #bioperl
14:49 Kaske^ back
15:44 dukeleto joined #bioperl
15:44 dukeleto joined #bioperl
15:45 dukeleto joined #bioperl
15:45 dukeleto joined #bioperl
15:46 dukeleto joined #bioperl
15:47 dukeleto joined #bioperl
15:47 dukeleto joined #bioperl
15:48 dukeleto joined #bioperl
15:48 dukeleto joined #bioperl
15:49 dukeleto joined #bioperl
15:49 dukeleto joined #bioperl
15:50 dukeleto joined #bioperl
15:51 dukeleto joined #bioperl
15:51 dukeleto joined #bioperl
15:51 CIA-42 bioperl-network: Chris Fields  * r1e8e3cb / (Build.PL Changes): small changes, see if pushing a new release helps CPAN indexing - http://git.io/NYmzKw
15:52 dukeleto joined #bioperl
15:52 dukeleto joined #bioperl
15:53 dukeleto joined #bioperl
15:54 dukeleto joined #bioperl
15:56 dukeleto joined #bioperl
15:57 dukeleto joined #bioperl
17:10 dukeleto joined #bioperl
17:11 dukeleto joined #bioperl
17:19 dukeleto joined #bioperl
17:20 dukeleto joined #bioperl
17:21 dukeleto joined #bioperl
17:21 dukeleto joined #bioperl
17:22 dukeleto joined #bioperl
17:22 dukeleto joined #bioperl
17:23 dukeleto joined #bioperl
17:23 dukeleto joined #bioperl
17:24 dukeleto joined #bioperl
17:25 dukeleto joined #bioperl
17:26 dukeleto joined #bioperl
17:26 dukeleto joined #bioperl
17:27 dukeleto joined #bioperl
17:27 dukeleto joined #bioperl
17:28 dukeleto joined #bioperl
17:28 dukeleto joined #bioperl
18:17 CIA-42 bioperl-run: Brian Osborne  * rc4abaef / lib/Bio/Tools/Run/Phylo/Phyml.pm : Modify program_name() for MPI version, not sure all args are set correctly yet. - http://git.io/TFBfIw
18:27 CIA-42 bioperl-run: Brian Osborne  * r5fde3d4 / lib/Bio/Tools/Run/Phylo/Phyml.pm : Modify program_name() for MPI version, not sure all args are set correctly yet. - http://git.io/fcQzsA
18:41 CIA-42 bioperl-run: Brian Osborne  * rbe6b8fa / lib/Bio/Tools/Run/Phylo/Phyml.pm : Modify program_name() for MPI version, not sure all args are set correctly yet. - http://git.io/Mj61MQ
18:47 CIA-42 bioperl-network: Robert Buels  * rbb7cf3d / (Changes dist.ini BUGS Build.PL INSTALL INSTALL.SKIP LICENSE): remove cruft and convert to dzil - http://git.io/qUhWiA
18:52 Bohemian joined #bioperl
18:55 Bohemian Holaa!
19:27 rbuels pyrimidine: ping
19:42 carandraug joined #bioperl
19:51 CIA-42 bioperl-network: Brian Osborne  * rd4b6af2 / (23 files in 5 dirs): More tidying, remove , and so on - http://git.io/Fypf_w
20:16 CIA-42 bioperl-network: Brian Osborne  * rd4b6af2 / (23 files in 5 dirs): More tidying, remove , and so on - https://github.com/bioperl/bioperl-network/co​mmit/d4b6af23250420dd05b7bfa4736638fdac5fc457
20:16 CIA-42 bioperl-network: Chris Fields  * r825a34c / (21 files in 5 dirs): merge from master, resolve conflicts with INSTALL and BUGS - http://git.io/L8DOHQ

| Channels | #bioperl index | Today | | Search | Google Search | Plain-Text | summary