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| 10:19 |
Kaske |
if i have a feature with segments, how can i access each subfeatures start and end coordinates and put it into display_name like: "10-100|300-500|550-600|..."? |
| 11:16 |
CIA-42 |
bioperl-live: Florent Angly * rc8fe212 / Bio/Seq/SimulatedRead.pm : Handle empty reference sequence description more gracefully - http://git.io/f8zq_g |
| 11:16 |
CIA-42 |
bioperl-live: Florent Angly * r416a408 / (Bio/SimpleAlign.pm t/Align/SimpleAlign.t): Merge branch 'master' of github.com:bioperl/bioperl-live - http://git.io/VhL1OQ |
| 12:51 |
deafferret |
Kaske: did you find it? |
| 12:53 |
deafferret |
Kaske: http://www.bioperl.org/wiki/HOWTO:Feature-Annotation#Getting_the_Features |
| 12:53 |
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| 12:53 |
deafferret |
errr... actually you might want to look at the *Location* stuff |
| 12:54 |
deafferret |
depending on ... i'll stop now since you might be gone :) |
| 12:54 |
deafferret |
and/or done :) |
| 13:20 |
Kaske |
im here, i'll take a look :) thanks |
| 14:01 |
deafferret |
have you looked at the docs for Bio::Location::SplitLocationI ? |
| 14:02 |
deafferret |
perhaps that's what you're looking for? |
| 14:02 |
deafferret |
the SYNOPSIS ? |
| 14:24 |
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| 14:33 |
CIA-42 |
bioperl-run: Brian Osborne * r14712c6 / (lib/Bio/Tools/Run/Phylo/Phyml.pm t/Njtree.t): Add option for MPI, all tests pass - http://git.io/3X1KBQ |
| 14:35 |
Kaske |
hmm... im not sure its what i needed as i already have the fragments as individual Bio::SeqFeature::Generic elements and combining them through another Bio::SeqFeature::Generic->new(-segments = [@features]) |
| 14:41 |
Kaske |
i might have attacked the problem from the wrong angle, can anyone point me in the right direction on how I can get my info from -tags from my features into the "-link" in a Bio::Graphics track? |
| 14:44 |
Kaske |
gotta relog, brb |
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Kaske^ |
back |
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CIA-42 |
bioperl-network: Chris Fields * r1e8e3cb / (Build.PL Changes): small changes, see if pushing a new release helps CPAN indexing - http://git.io/NYmzKw |
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| 18:17 |
CIA-42 |
bioperl-run: Brian Osborne * rc4abaef / lib/Bio/Tools/Run/Phylo/Phyml.pm : Modify program_name() for MPI version, not sure all args are set correctly yet. - http://git.io/TFBfIw |
| 18:27 |
CIA-42 |
bioperl-run: Brian Osborne * r5fde3d4 / lib/Bio/Tools/Run/Phylo/Phyml.pm : Modify program_name() for MPI version, not sure all args are set correctly yet. - http://git.io/fcQzsA |
| 18:41 |
CIA-42 |
bioperl-run: Brian Osborne * rbe6b8fa / lib/Bio/Tools/Run/Phylo/Phyml.pm : Modify program_name() for MPI version, not sure all args are set correctly yet. - http://git.io/Mj61MQ |
| 18:47 |
CIA-42 |
bioperl-network: Robert Buels * rbb7cf3d / (Changes dist.ini BUGS Build.PL INSTALL INSTALL.SKIP LICENSE): remove cruft and convert to dzil - http://git.io/qUhWiA |
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Bohemian |
Holaa! |
| 19:27 |
rbuels |
pyrimidine: ping |
| 19:42 |
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CIA-42 |
bioperl-network: Brian Osborne * rd4b6af2 / (23 files in 5 dirs): More tidying, remove , and so on - http://git.io/Fypf_w |
| 20:16 |
CIA-42 |
bioperl-network: Brian Osborne * rd4b6af2 / (23 files in 5 dirs): More tidying, remove , and so on - https://github.com/bioperl/bioperl-network/commit/d4b6af23250420dd05b7bfa4736638fdac5fc457 |
| 20:16 |
CIA-42 |
bioperl-network: Chris Fields * r825a34c / (21 files in 5 dirs): merge from master, resolve conflicts with INSTALL and BUGS - http://git.io/L8DOHQ |
