| Time |
Nick |
Message |
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| 08:42 |
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| 10:37 |
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| 11:12 |
leont |
I have visualized the dependency tree of BioPerl-live |
| 11:12 |
leont |
It's more complicated than I thought |
| 11:13 |
leont |
GraphViz had issues converting it to png, because it didn't fit in the 32K width limit initially |
| 11:36 |
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| 12:30 |
leont |
Got a pagerank of the data too now :-) |
| 13:55 |
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| 14:34 |
jhannah |
leont: come back and tell me more |
| 15:57 |
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| 16:00 |
ende |
https://gist.github.com/1295816 anyone know what the suggested limit on Bio::DB::GenBank queries is? |
| 16:07 |
rbuels |
ende: doesn't look like you're hitting the limit, just looks like that web service is having problems |
| 16:07 |
rbuels |
not unusual. |
| 16:12 |
ende |
oh |
| 16:12 |
ende |
just keep trying? |
| 16:36 |
ende |
its gotta be a size limit rbuels, it works fine when I trim my list down to say 100 genes |
| 16:36 |
ende |
my original query was huge |
| 16:36 |
rbuels |
ende: maybe you're actually causing their stuff to error out, heh |
| 16:37 |
* rbuels |
bets there are buffer-overflow attacks against ncbi's web backends since they are probably written in C |
| 16:37 |
ende |
haha |
| 16:37 |
rbuels |
(by biologists) |
| 20:24 |
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