Camelia, the Perl 6 bug

IRC log for #bioperl, 2012-01-15

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All times shown according to UTC.

Time Nick Message
03:33 CIA-67 Bio-EUtilities: Chris Fields master * r1a6cae6 / (4 files in 3 dirs): remove Data::Dumper - http://git.io/1gtAuw
03:33 CIA-67 Bio-EUtilities: Chris Fields master * rac36207 / Changes : post 1.71 commit - http://git.io/fa_rmg
03:51 CIA-67 Bio-EUtilities: Chris Fields master * rd4a1083 / dist.ini : make the prereqs specific, autoprereqs is missing Test::Most - http://git.io/7HZPxw
03:51 CIA-67 Bio-EUtilities: Chris Fields master * r667b799 / dist.ini : make Bio::Root::Test build requirement (this allows older versions with Test::More to work - http://git.io/J8GUWQ
04:01 CIA-67 Bio-EUtilities: Chris Fields master * r5e51dcb / Changes : changes for next release - http://git.io/11Z-CA
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11:07 Janek Hello there. Could i ask for some recommendation? I have a script that parses through my blast result and retrieves the start and end positions of hsp's. Then it modifies them (ads,subtracts) and assignees to a knew scalar. Now i would want to extract the sequences from my locally downloaded genome using the modified start and end positions. Which module of BioPerl should i use to do it?
11:12 Janek The genome is in fasta.
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12:48 Janek Helo there i have this script https://gist.github.com/5e57f3e9c9041c7615f1 It parses through my blast result and retrives the start and end positions of hsp's. Then it modifies them (ads,subtracts) and asignes to a knew scalar. Now i wolud want to extract the sequences from my localy downloaded genome using the modified start and end positions but it throws at me a  "MSG: Bad end parameter (35332824). End must be less than the total
12:48 Janek not the problem.  I would be realy gratefull for your help
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15:19 saddy hi. i'm trying to use bioperl6 with already having rakudo installed and working. anybody?
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15:28 saddy ah. i need the panda module manager to install it. thanks.
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