Camelia, the Perl 6 bug

IRC log for #bioperl, 2012-05-10

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All times shown according to UTC.

Time Nick Message
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02:44 CIA-66 bioperl-live: Florent Angly master * r3f3eec1 / scripts/taxa/bp_classify_hits_kingdom.pl : Fixed POD typo, inconsistent indentation and 'variable masks earlier declaration' warning - http://git.io/mfrYdg
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04:54 CIA-66 bioperl-live: Florent Angly master * r3b3ba68 / scripts/taxa/bp_classify_hits_kingdom.pl : Fixed bug where one could pass a directory instead of a regular file for the gi2taxid option (-g) - http://git.io/MklMGA
05:00 CIA-66 bioperl-live: Florent Angly master * r92efff0 / scripts/taxa/bp_classify_hits_kingdom.pl : Actually make sure that input is a valid file - http://git.io/zD9e-w
05:33 CIA-66 bioperl-live: Florent Angly master * rbcd37e4 / scripts/taxa/bp_taxonomy2tree.pl : Added a help message, updated POD doc, misc small code changes - http://git.io/1bYgFA
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15:02 driley So just as an update on my efforts to index a bam file, I can only seem to seek successfully in the very beginning of the file. If I request an offset further down the file I get either nothing, or the seek pointer just stays at the beginning of the file.
15:03 driley newest code is here: http://pastebin.com/jfdMJ4H5 First arg is the bam file second arg is the line number to pull.
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20:55 CIA-66 bioperl-live: Chris Fields master * reece9dd / Bio/SeqIO/tab.pm : change \W+ tp \s+, allows gaps (per Tim White) - http://git.io/sOjHTQ
21:17 driley_mac So I've modified a little of Sam.xs and I can force the seek to go to the position I want but it doesn't find a valid record there (result of read1).
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22:17 Topic for #bioperl is now Be patient! People chat here daily, but not necessarily the minute or hour you wandered in. Leave your IRC client connected. | http://bioperl.org/wiki/IRC#Getting_help | http://www.bioperl.org/wiki/Using_Git | nopaste to gist.github.com
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