Camelia, the Perl 6 bug

IRC log for #bioperl, 2012-05-11

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All times shown according to UTC.

Time Nick Message
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20:22 Mythee It worked! :D
20:22 Mythee Hello, anyone here?
20:23 Mythee Guess not...?
20:27 pyrimidine yes?
20:29 Mythee Oh. Hi. We don't know each other, and I might be intruding, but I honestly have no idea where to ask this.
20:30 Mythee If anyone here has ever used Gibthon (a biopython Gibson assembly program), if they have the time to, I would love to ask a question
20:30 Mythee If nobody has, well, that's ok, and sorry for bothering you.
20:31 pyrimidine best place is the biopython mail list (I don't think they have an #IRC channel)
20:33 Mythee Does a mail list answer questions? Or do you mean like... sending an e-mail to everyone on the list with the question?
20:33 Mythee Well, in any case, I'll look into it, thanks
20:35 pyrimidine Mythee: see here: http://biopython.org/wiki/Mailing_lists
20:36 Mythee Thanks!
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21:03 driley So in case anyone was paying attention to my struggles to index a bam file for random line access, it turns out it's more of a pain than just doing a seek. This is obvious since the file is compressed. bgzf accomplishes indexing by compressing in blocks.
21:03 driley pretty slick stuff actually.
21:03 driley I ended up just splitting the files.
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21:18 driley good reading here: http://blastedbio.blogspot.com/2011/11‚Äč/bgzf-blocked-bigger-better-gzip.html
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