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| 20:21 |
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| 20:22 |
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Mythee |
It worked! :D |
| 20:22 |
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Mythee |
Hello, anyone here? |
| 20:23 |
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Mythee |
Guess not...? |
| 20:27 |
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pyrimidine |
yes? |
| 20:29 |
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Mythee |
Oh. Hi. We don't know each other, and I might be intruding, but I honestly have no idea where to ask this. |
| 20:30 |
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Mythee |
If anyone here has ever used Gibthon (a biopython Gibson assembly program), if they have the time to, I would love to ask a question |
| 20:30 |
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Mythee |
If nobody has, well, that's ok, and sorry for bothering you. |
| 20:31 |
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pyrimidine |
best place is the biopython mail list (I don't think they have an #IRC channel) |
| 20:33 |
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Mythee |
Does a mail list answer questions? Or do you mean like... sending an e-mail to everyone on the list with the question? |
| 20:33 |
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Mythee |
Well, in any case, I'll look into it, thanks |
| 20:35 |
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pyrimidine |
Mythee: see here: http://biopython.org/wiki/Mailing_lists |
| 20:36 |
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Mythee |
Thanks! |
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| 21:02 |
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driley |
So in case anyone was paying attention to my struggles to index a bam file for random line access, it turns out it's more of a pain than just doing a seek. This is obvious since the file is compressed. bgzf accomplishes indexing by compressing in blocks. |
| 21:03 |
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driley |
pretty slick stuff actually. |
| 21:03 |
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driley |
I ended up just splitting the files. |
| 21:16 |
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| 21:18 |
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driley |
good reading here: http://blastedbio.blogspot.com[…]-better-gzip.html |
| 21:55 |
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