Camelia, the Perl 6 bug

IRC log for #bioperl, 2012-05-21

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All times shown according to UTC.

Time Nick Message
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03:19 CIA-66 bioperl-live: Florent Angly master * r791f66a / Bio/Tree/TreeFunctionsI.pm : POD update and minor changes to add_trait() - http://git.io/CZ8qFw
03:19 CIA-66 bioperl-live: Florent Angly master * rbafabb5 / (Bio/Tree/TreeFunctionsI.pm t/Tree/TreeStatistics.t): Return undef if column number is exceeded in add_trait() - http://git.io/Oh88mA
03:19 CIA-66 bioperl-live: Florent Angly master * rf290574 / Bio/Tree/Statistics.pm : POD update and indentation cleaning - http://git.io/tXfWDw
03:19 CIA-66 bioperl-live: Florent Angly master * r8131205 / (3 files in 3 dirs): Option to ignore leaves with missing trait value when doing add_trait() - http://git.io/bQbebA
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15:31 dbolser hello
15:31 dbolser what is the word on coordinate conversion using alignment objects?
15:31 dbolser does it work these days?
15:34 dbolser http://www.bioperl.org/wiki/BioPerl_Tu​torial#Converting_coordinate_systems_.28Coordinate::Pair.2C_RelSegment.29
15:35 dbolser and you can stuff multiple Bio::Coord::Pairs into a 'B::C::Mapper', but what I want is a way to generate a mapper from an Alignment object...
15:38 dbolser also... was Jason Stajich hangining out in here a while back?
16:35 jhannah dbolser: I haven't seen Jason in here in years, and then only briefly. iirc
16:54 dbolser hello jhannah
17:21 * jhannah waves
17:21 jhannah I remember coordinate system mapping being a hell of a lot of work  :)
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