Camelia, the Perl 6 bug

IRC log for #bioperl, 2013-09-02

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All times shown according to UTC.

Time Nick Message
00:54 kai__ joined #bioperl
01:58 carandraug joined #bioperl
03:14 pyrimidine joined #bioperl
03:44 github [bioperl-live] cjfields pushed 14 new commits to v1_cherry: https://github.com/bioperl/bioperl-liv​e/compare/1580ffed18fe...c8323dbe7c2c
03:44 github bioperl-live/v1_cherry 0af95c4 Brian Osborne: Add partial support for nhmmer (version 3.1)
03:44 github bioperl-live/v1_cherry f55b058 Brian Osborne: Add strand() so nhmmer can get strand data
03:44 github bioperl-live/v1_cherry 2fd4f00 Brian Osborne: Back this out, related tests are failing
03:56 github [bioperl-live] cjfields pushed 33 new commits to v1_cherry: https://github.com/bioperl/bioperl-liv​e/compare/c8323dbe7c2c...d49e68441667
03:56 github bioperl-live/v1_cherry d06927f Chris Fields: fix POD syntax
03:56 github bioperl-live/v1_cherry 07632f4 Chris Fields: Merge branch 'master' of git://github.com/viklund/bioperl-live into topic/viklund-master
03:56 github bioperl-live/v1_cherry cdb4899 Chris Fields: Merge branch 'master' of git://github.com/viklund/bioperl-live into topic/viklund-master
04:38 github [bioperl-live] cjfields pushed 2 new commits to master: https://github.com/bioperl/bioperl-liv​e/compare/658a1669fa33...63012f2e02c3
04:38 github bioperl-live/master 18a1b00 Chris Fields: fix remote DB test
04:38 github bioperl-live/master 63012f2 Chris Fields: another fix (related ID)
05:01 github [bioperl-live] cjfields pushed 1 new commit to v1_cherry: https://github.com/bioperl/bioperl-live/comm​it/770e383ec60320ad25abdd15c8f74d433e3f77ec
05:01 github bioperl-live/v1_cherry 770e383 Chris Fields: add back mising tests from master
05:08 github [bioperl-live] cjfields pushed 1 new commit to v1_cherry: https://github.com/bioperl/bioperl-live/comm​it/18068f1649f6f9f42f8f54e84eca694b04fe69a7
05:08 github bioperl-live/v1_cherry 18068f1 Chris Fields: fix remote reversal of order bug
05:14 github [bioperl-live] cjfields pushed 1 new commit to v1_cherry: https://github.com/bioperl/bioperl-live/comm​it/688553485ae92abdf0fb553d733306607359b072
05:14 github bioperl-live/v1_cherry 6885534 Chris Fields: get test passing in cases where Error not installed
05:15 github [bioperl-live] cjfields pushed 1 new commit to v1_cherry: https://github.com/bioperl/bioperl-live/comm​it/f6f73ba2ce5baae0782f4a812ce0e3378597bb6e
05:15 github bioperl-live/v1_cherry f6f73ba Chris Fields: add v1_cherry
05:16 github [bioperl-live] cjfields pushed 1 new commit to v1_cherry: https://github.com/bioperl/bioperl-live/comm​it/30506f0365ffb8a3723bf088243fa74e05c7bb04
05:16 github bioperl-live/v1_cherry 30506f0 Chris Fields: add 5.18  for branch
05:18 github [bioperl-live] cjfields pushed 1 new commit to master: https://github.com/bioperl/bioperl-live/comm​it/f3d9afe8809fb74257b8a4b2e4d8af10eeb58ccf
05:18 github bioperl-live/master f3d9afe Chris Fields: Merge branch 'topic/travis-scripts'
05:19 github [bioperl-live] cjfields deleted topic/travis-scripts at bbeb1c0: https://github.com/bioperl/​bioperl-live/commit/bbeb1c0
05:20 github [bioperl-live] cjfields pushed 1 new commit to master: https://github.com/bioperl/bioperl-live/comm​it/246ff299007dd6333cdba07293e250159c89368a
05:20 github bioperl-live/master 246ff29 Chris Fields: remove branch from testing
05:22 github [bioperl-live] cjfields pushed 1 new commit to v1: https://github.com/bioperl/bioperl-live/comm​it/3e4333b9b573d84753cc274d4758331f59e1aa87
05:22 github bioperl-live/v1 3e4333b Chris Fields: Merge branch 'v1_cherry' into v1
05:22 github [bioperl-live] cjfields deleted v1_cherry at 30506f0: https://github.com/bioperl/​bioperl-live/commit/30506f0
05:23 github [bioperl-live] cjfields pushed 1 new commit to v1: https://github.com/bioperl/bioperl-live/comm​it/23266c037a38c85eb372cc649e4de73f80d6dfc1
05:23 github bioperl-live/v1 23266c0 Chris Fields: remove obsolete branch from testing
07:03 bbb_ joined #bioperl
07:35 kai joined #bioperl
11:40 VanAxel joined #bioperl
11:40 VanAxel hello@all
11:41 VanAxel does anybody knows something about the reasons of the unavailability of the bioperl under fedora 19 ?
11:42 VanAxel (as package)
18:27 paradoxgo joined #bioperl
19:58 github [bioperl-live] cjfields deleted v1 at 23266c0: https://github.com/bioperl/​bioperl-live/commit/23266c0
19:59 github [bioperl-live] cjfields created v1.6.x (+119 new commits): https://github.com/bioperl/bio​perl-live/compare/6524a201cc4d^...23266c037a38
19:59 github bioperl-live/v1.6.x 6524a20 Warren W. Kretzschmar: Updated location of test input files for msout.t
19:59 github bioperl-live/v1.6.x 63d5249 Warren W. Kretzschmar: changed use of 'gunzip -c' to 'gzip -dc' for better compatibility with macosx
19:59 github bioperl-live/v1.6.x 69c9185 Warren W. Kretzschmar: test files are now not written by msout.t. Relying instead of git...
20:08 github [bioperl-live] cjfields deleted embl_write_id_line_fix at 5e552c0: https://github.com/bioperl/​bioperl-live/commit/5e552c0
20:08 github [bioperl-live] cjfields deleted my_root_branch at 6f37560: https://github.com/bioperl/​bioperl-live/commit/6f37560
20:09 github [bioperl-live] cjfields deleted no_nse_option at 9b7d2f9: https://github.com/bioperl/​bioperl-live/commit/9b7d2f9
20:09 github [bioperl-live] cjfields deleted topic/davemessina-multiphylip at b8ae20c: https://github.com/bioperl/​bioperl-live/commit/b8ae20c
20:09 github [bioperl-live] cjfields deleted topic/eutils-migration at 0aee0e5: https://github.com/bioperl/​bioperl-live/commit/0aee0e5
20:09 github [bioperl-live] cjfields deleted topic/lstein-seqfeature-store-summaries at 6a6f0ac: https://github.com/bioperl/​bioperl-live/commit/6a6f0ac
20:09 github [bioperl-live] cjfields deleted topic/tree_bulkload at dd7a316: https://github.com/bioperl/​bioperl-live/commit/dd7a316
20:14 github [bioperl-live] cjfields pushed 1 new commit to master: https://github.com/bioperl/bioperl-live/comm​it/abfbec4633331f15ee5d71e0ddc78573fe8cf714
20:14 github bioperl-live/master abfbec4 Chris Fields: add back perl versions
20:52 paradoxgo joined #bioperl
21:32 paradoxgo is Bio::SeqStats installed with a default / standard bioperl installation or do I have to get it separately?
22:06 paradoxgo joined #bioperl
22:25 paradoxgo joined #bioperl
22:45 paradoxgo joined #bioperl
22:53 paradoxgo joined #bioperl

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