Perl 6 - the future is here, just unevenly distributed

IRC log for #bioperl, 2013-12-18

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All times shown according to UTC.

Time Nick Message
23:28 average joined #bioperl
00:25 average joined #bioperl
03:30 github [bioperl-live] cjfields pushed 1 new commit to v1.6.x: https://github.com/bioperl/bioperl-live/comm​it/4b50bfe70c9109492a7896c1178091f6ffb7ebb9
03:30 github bioperl-live/v1.6.x 4b50bfe Brian Osborne: Set the EUtils URL in NCBIHelper, inherit in entrez.pm and GenBank.pm, t/RemoteDB/Taxonomy.t and t/RemoteDB/GenBank.t tests pass
03:31 github [bioperl-live] cjfields created topic/1.6-cherry (+1 new commit): https://github.com/bioperl/bio​perl-live/commit/3c7cd25fc48a
03:31 github bioperl-live/topic/1.6-cherry 3c7cd25 Chris Fields: add branch to track commits
03:36 scottcain joined #bioperl
03:43 github [bioperl-live] cjfields pushed 2 new commits to topic/1.6-cherry: https://github.com/bioperl/bioperl-liv​e/compare/3c7cd25fc48a...4b2564ede80f
03:43 github bioperl-live/topic/1.6-cherry 5935e37 Francisco J. Ossandon: PrimarySeqI.pm: Avoid using Bio::Root::clone when object...
03:43 github bioperl-live/topic/1.6-cherry 4b2564e Chris Fields: No, really, fix the conflict :P
03:46 github [bioperl-live] cjfields pushed 1 new commit to topic/1.6-cherry: https://github.com/bioperl/bioperl-live/comm​it/6b36050db6c893425ba3474f11ef9d36aa4295a5
03:46 github bioperl-live/topic/1.6-cherry 6b36050 Chris Fields: forgot to be on topic
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03:52 github [bioperl-live] cjfields pushed 5 new commits to topic/1.6-cherry: https://github.com/bioperl/bioperl-liv​e/compare/6b36050db6c8...26219cf76e72
03:52 github bioperl-live/topic/1.6-cherry f845d35 Francisco J. Ossandon: FTLocationFactory.pm: Fix in from_string() for some complex...
03:52 github bioperl-live/topic/1.6-cherry f767b6e Brian Osborne: Reformatting and editing
03:52 github bioperl-live/topic/1.6-cherry dad372e Francisco J. Ossandon: Fix typing errors
04:03 github [bioperl-live] cjfields pushed 22 new commits to topic/1.6-cherry: https://github.com/bioperl/bioperl-liv​e/compare/26219cf76e72...768a7c1a4f8d
04:03 github bioperl-live/topic/1.6-cherry 6922ceb Brian Osborne: Fix to alignment regex
04:03 github bioperl-live/topic/1.6-cherry b59fe25 Chris Fields: add test case for GenBank tests for bug #3448
04:03 github bioperl-live/topic/1.6-cherry 475a279 Chris Fields: clean up code
04:08 scottcain joined #bioperl
04:11 github [bioperl-live] cjfields pushed 34 new commits to topic/1.6-cherry: https://github.com/bioperl/bioperl-liv​e/compare/768a7c1a4f8d...ef61a274f3d5
04:11 github bioperl-live/topic/1.6-cherry fa84d4f Francisco J. Ossandon: Bio/Index/Abstract: Fixed uninitialized warning from pack_record
04:11 github bioperl-live/topic/1.6-cherry afbee4b Francisco J. Ossandon: Bio/Assembly/Singlet: Get End from parent sequence when locatable sequence...
04:11 github bioperl-live/topic/1.6-cherry a05ee76 Francisco J. Ossandon: Bio/SearchIO/blasttable: Recover conserved value from %positives...
04:22 github [bioperl-live] cjfields pushed 1 new commit to v1.6.x: https://github.com/bioperl/bioperl-live/comm​it/3074d66e425cda856bafa43c221382b7901849ef
04:22 github bioperl-live/v1.6.x 3074d66 Chris Fields: bump versions prior to merge
04:22 github [bioperl-live] cjfields deleted topic/1.6-cherry at ef61a27: https://github.com/bioperl/​bioperl-live/commit/ef61a27
04:32 github [bioperl-live] cjfields pushed 1 new commit to v1.6.x: https://github.com/bioperl/bioperl-live/comm​it/f3871f647a221b0b95204746a5b647ace1bf92a2
04:32 github bioperl-live/v1.6.x f3871f6 Chris Fields: [skip ci] add some changes
04:34 github [bioperl-live] cjfields pushed 1 new commit to master: https://github.com/bioperl/bioperl-live/comm​it/21870334ab3f46c1d1345bc7d73d686710caff3d
04:34 github bioperl-live/master 2187033 Chris Fields: [skip ci] add some changes
04:57 github [bioperl-live] cjfields pushed 1 new commit to master: https://github.com/bioperl/bioperl-live/comm​it/adb315725f0c23b4db2d68f00d9fee99f7a63ac7
04:57 github bioperl-live/master adb3157 Chris Fields: skip Bio::ASN1::EntrezGene check (circ dependency fixed in last release)
04:57 github [bioperl-live] cjfields pushed 1 new commit to v1.6.x: https://github.com/bioperl/bioperl-live/comm​it/37e70a330b70ed53cded0625ec6256b87725f756
04:57 github bioperl-live/v1.6.x 37e70a3 Chris Fields: skip Bio::ASN1::EntrezGene check (circ dependency fixed in last release)
05:12 github [bioperl-live] cjfields tagged release-1-6-923 at dae4841: https://github.com/bioperl/biope​rl-live/commits/release-1-6-923
05:46 average joined #bioperl
09:45 prdxg joined #bioperl
11:36 carandraug joined #bioperl
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15:55 github [bioperl-live] fjossandon pushed 1 new commit to master: https://github.com/bioperl/bioperl-live/comm​it/ef72a6545923a125adf5aee95989868d0606e7b0
15:55 github bioperl-live/master ef72a65 Francisco J. Ossandon: Bio/DB/TFBS/transfac_pro.pm: Added a DESTROY method to remove...
18:14 prdxg joined #bioperl
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19:47 github [bioperl-live] cjfields pushed 1 new commit to topic/cjfields_psl_fixes: https://github.com/bioperl/bioperl-live/comm​it/a458d35747594cb4327392c4194bee454fa34c0d
19:47 github bioperl-live/topic/cjfields_psl_fixes a458d35 Chris Fields: Merge branch 'master' into topic/cjfields_psl_fixes
19:51 scottcain joined #bioperl
21:57 github [bioperl-live] fjossandon pushed 6 new commits to master: https://github.com/bioperl/bioperl-liv​e/compare/ef72a6545923...d635999e155a
21:57 github bioperl-live/master 82afcfe Francisco J. Ossandon: BioFetch.pm: Close first the filehandle and then test for a throw,...
21:57 github bioperl-live/master cd77ef9 Francisco J. Ossandon: WebDBSeqI.pm: Close a filehandle from an object that...
21:57 github bioperl-live/master 2ad6234 Francisco J. Ossandon: MeSH.pm: A possible format change in the html content broke...

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