Perl 6 - the future is here, just unevenly distributed

IRC log for #bioperl, 2014-03-04

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All times shown according to UTC.

Time Nick Message
01:21 Jayk97 joined #bioperl
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12:21 average joined #bioperl
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14:32 github [bioperl-live] fjossandon pushed 1 new commit to master: https://github.com/bioperl/bioperl-live/commit/8ed38853a765a0f5ff224e13c6717033c1dbaa3a
14:32 github bioperl-live/master 8ed3885 Francisco J. Ossandon: SeqFeatureDB Postgres: Changed the use of system("cp") command...
14:33 github [bioperl-live] fjossandon pushed 1 new commit to v1.6.x: https://github.com/bioperl/bioperl-live/commit/580417709006263d2e87a5135f427d70745d91a8
14:33 github bioperl-live/v1.6.x 5804177 Francisco J. Ossandon: SeqFeatureDB Postgres: Changed the use of system("cp") command...
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15:01 sosi hello guys! a newbie here, so I'm sorry if this is a very simple question
15:02 sosi I'm trying to download all files with a specific extension from a page
15:02 sosi can anyone give me some advice on how to do it? I honestly have no idea on how to do it, so all help is welcomed.
15:06 sosi I tried the approach in this answer
15:06 sosi http://stackoverflow.com/a/15439452/1379826
15:06 sosi but to no avail
15:27 carandraug sosi, you should ask in #perl. This channel is for bioperl
15:29 sosi I'll do it then. I was asking here because I am trying to download a bunch of genomes from NCBI and was thinking this would be the place for it
15:39 flu joined #bioperl
15:42 carandraug sosi, from NCBI, they must have a FTP server. You should be able to connect to it anonymously, and pull everything with a specific extension
15:42 sosi Yep! That's exactly it! I was trying to download all fasta files from here ftp://ftp.ncbi.nih.gov/genomes/Fungi/Saccharomyces_cerevisiae_uid128/
15:44 carandraug sosi, read Net::FTP documentation. Get a list of files from the directory you're interest, grep the ones with the interesting extension and pull them
15:45 sosi thanks! will do!
15:46 sosi anonymous "login" should work huh? or may I completely avoid any login?
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16:46 sosi this solution from #perl_help worked: http://paste.scsys.co.uk/319218 :)
17:53 github [bioperl-live] fjossandon pushed 1 new commit to master: https://github.com/bioperl/bioperl-live/commit/f2499c1ea80cf2cb602a483ad4cb66d1929851eb
17:53 github bioperl-live/master f2499c1 Francisco J. Ossandon: Bio/Ontology/InterProTerm: Fixed an uninitialized warning in...
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