Camelia, the Perl 6 bug

IRC log for #bioruby, 2012-04-26

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All times shown according to UTC.

Time Nick Message
00:59 shevy joined #bioruby
05:58 pjotrp joined #bioruby
06:16 pjotrp rbuels: another point to consider for a fast parser is that we will make it lazy
06:16 pjotrp in a genome browser you only fetch one block that needs to be fully parsed
06:23 ilpuccio joined #bioruby
07:04 DannyArends joined #bioruby
07:04 DannyArends OK, I think I am connected
07:05 DannyArends Could anyone getting this in bioruby reply so I know people can see me
07:12 pjotrp hi
07:12 pjotrp hi Danny :)
07:14 DannyArends Yay
07:14 DannyArends That means it worked, I had my nick registered already... so I had to reset the password
07:21 DannyArends owkay...
07:22 DannyArends Nou ik blijf gewoon lurken hiero... we hebben van 11-2 een LFN meeting maar verder ben ik hier, moet toch men master branch nog fixen van de deprated spulletjes
07:23 DannyArends Ik ben er bijna, alleen de genotypes pleurt ie als [1,1] ipv A in de binairy xgap file
07:23 DannyArends Hadden ze dezelfde namen op github ?
07:27 DannyArends Marjan = MaMarjan ?
07:28 ilpuccio joined #bioruby
07:44 DannyArends joined #bioruby
07:46 DannyArends Vaag ik heb een betere client nodig denk ik.. hij crashed als ik iets naar een channel wil zenden
07:50 pjotrp I use xchat
07:51 pjotrp pidgin is also quite good
07:51 pjotrp better stick to en_en here
07:54 matteop joined #bioruby
08:04 DannyArends joined #bioruby
08:04 DannyArends Owkay This seems like a much better client
08:06 fstrozzi joined #bioruby
11:25 marjan joined #bioruby
12:37 ilpuccio hello
12:41 shevy <-- xchat here too
12:47 ilpuccio Limehere
12:54 lomereiter joined #bioruby
12:58 fstrozzi hi guys
13:04 lomereiter hi
13:10 lomereiter fstrozzi: I've read your email about fastq and quality conversion. Have you tried to use read_array_of_int instead of read_array_of_type?
13:10 lomereiter http://rubydoc.info/gems/ffi/0.6.3/FFI/P​ointer#read_array_of_int-instance_method
13:15 fstrozzi I think read_array_of_type is just a generic wrapper around the specific read_array_of_(int, long, pointer)
13:17 lomereiter not quite
13:18 lomereiter expand 'view source' there
13:18 lomereiter you'll see that read_array_of_int just calls C function whereas read_array_of_type uses Object.send
13:23 fstrozzi I'll look at it
13:25 lomereiter https://github.com/ffi/ffi/blob/mas​ter/ext/ffi_c/AbstractMemory.c#L141
13:25 lomereiter here it's implementation in C
13:34 fstrozzi I'll make some tests to assess speed
14:01 marjan joined #bioruby
14:11 Helius joined #bioruby
14:12 Helius Hello
14:17 marjan hi
14:19 Helius so Happy GSoC :)
14:19 marjan thx :)
14:20 marjan 2u2 :)
14:20 fstrozzi hi all guys
14:24 DannyArends hey all
14:26 pjotrp Looks like I got at an hour wrong
14:27 pjotrp need a little time to set up
14:37 pjotrp DannyArends is a D coder :)
14:37 pjotrp programs in D
14:37 DannyArends hahahaha
14:37 DannyArends :P
14:37 pjotrp on a good day
14:38 pjotrp setting up a hangouw
14:38 DannyArends seems you kind of like google+
14:40 pjotrp only hangouts
14:41 DannyArends oww I don have a microphone or cam plugged in
14:42 pjotrp i think we'll partly work on IRC
14:42 DannyArends why do you like them more then e.g. just using skype / msn ?
14:42 DannyArends (never used hangouts yet)
14:43 DannyArends But then again I dont have that many people on google+ most of the poeple I know use facebook
14:43 marjan better sound quality
14:43 marjan at least for me
14:43 marjan had a lot of problems the last time I used skype
14:43 DannyArends owkay :) thats indeed poor with msn and skype sometimes
14:44 Helius DannyArends: first use a shorter nick :D, second with many players it s...s
14:44 Helius :)
14:44 marjan where are you guys? :)
14:44 pjotrp I sent out an invite
14:44 pjotrp marjan is with me
14:44 fstrozzi so who can join Google+ hangout ?
14:45 DannyArends hmm download takes 1 day... wthell
14:45 fstrozzi (asking students)
14:45 DannyArends 722kb and 1 day 2 download it
14:46 DannyArends 4 bytes a second... :) darn
14:46 DannyArends I thought the university of Groningen had a good internet connection
14:46 marjan lomereiter, are you here?
14:46 lomereiter yup, I'll join the hangout
14:46 pjotrp confusion galore
14:48 pjotrp lomereiter: do you see my invite?
14:49 fstrozzi lomereiter: read_array_from_int seems to have a better performance than read_array_of_type
14:49 fstrozzi At the time I was using also read_array_from_pointer and that it's just wrapped by read_array_of_type
14:49 DannyArends Well I think Iĺl skip the hangout, Need to go home soon anywayz, I have to swim this evening
14:50 DannyArends next time Iĺl join you
14:50 fstrozzi so I thought was the same for int (always look at the source code : ) )
14:50 fstrozzi thanks for the tip
14:57 DannyArends ps off topic but pjotrp did you test the commits I made to qtlHD already ? Otherwise Iĺl test the unix version when I come back from swimming tonight
14:58 csw joined #bioruby
14:58 Helius csw: hi
14:59 csw good morning
15:05 DannyArends good morning, Danny Signing off n going home
15:06 fstrozzi bye
15:43 tktym joined #bioruby
16:14 pjotrp DannyArends: I'll check
16:16 pjotrp thanks all, we had a productive hangout
16:37 Helius bye bye
17:19 pjotrparrot joined #bioruby

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