Camelia, the Perl 6 bug

IRC log for #bioruby, 2012-05-31

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All times shown according to UTC.

Time Nick Message
00:41 shevy2 joined #bioruby
03:00 pjotrparrot joined #bioruby
08:39 fstrozzi joined #bioruby
09:10 Helius joined #bioruby
10:24 marjan joined #bioruby
13:22 marjan joined #bioruby
13:51 lomereiter joined #bioruby
14:02 fstrozzi joined #bioruby
14:02 csw joined #bioruby
14:02 pjotrp joined #bioruby
14:03 csw good morning Pjotr
14:04 pjotrp hi
14:04 pjotrp Google wants a bloody plugin update - weird
14:06 csw yikes
14:06 csw Francesco got the hangout started, I just sent you an invite
14:06 csw so whenever the plugin is installed...
14:06 pjotrp ok
14:10 marjan lomereiter, what's your status? :)
14:22 csw Helius: are you still on the hangout?
14:27 fstrozzi guys sent out another invite
14:27 fstrozzi you can join
14:53 Helius csw: do you want to reuse the bin indexing ?
14:54 Helius csw: if i remember correctely that comes from UCSC, so are you evaluating it ? http://genomewiki.ucsc.edu/i​ndex.php/Bin_indexing_system
14:54 csw yeah, I'm using that at the moment
14:54 csw although it's not a whole indexing system by itself
14:55 csw UCSC uses it with MySQL indexes, for instance, but the bx-python indexing code also uses UCSC bins in their index format
14:57 Helius csw: so which is the plan ?
14:58 csw I'll email the author of the bio-ucsc-api gem, explain my use case (all I need is https://github.com/misshie/bioruby-ucsc-a​pi/blob/master/lib/bio-ucsc/ucsc_bin.rb)
14:58 csw and ask what he thinks of splitting out that bin code into a standalone gem
14:58 csw so it can be used without pulling in MySQL dependencies etc.
15:01 Helius csw: ok
15:19 csw joined #bioruby
15:19 csw joined #bioruby
16:15 marjan joined #bioruby
20:50 audy hi y'all
20:50 audy does Bio::Blast.parser work? I'm getting an error when parsing an XML file

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