Camelia, the Perl 6 bug

IRC log for #cdk, 2007-08-02

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All times shown according to UTC.

Time Nick Message
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07:46 steinbeck moin
07:53 egonw hi steinbeck
07:54 egonw umm... coffee time
08:09 CIA-34 jmol: nicove * r8028 /trunk/Jmol-FAH/projects/ (p2308.xyz.gz p2618.xyz.gz): Folding@Home
08:57 jbrefort joined #cdk
08:57 egonw hi jbrefort
09:02 CIA-34 blueobelisk: egonw * r72 /cb/trunk/parse_wp_links.pl: Ignore some wiki pages which are not chemicals
09:02 jbrefort hi egonw
09:03 CIA-34 blueobelisk: egonw * r73 /cb/trunk/pipeline.pl: Put mol extraction from WP in the pipeline
09:04 CIA-34 blueobelisk: egonw * r74 /cb/trunk/get_inchis.pl: Fail safely if no InChI was created
09:04 CIA-34 blueobelisk: egonw * r75 /cb/trunk/get_cid_cml.pl: Use custom babel version and check for reasonable CID
09:05 CIA-34 blueobelisk: egonw * r76 /cb/trunk/get_cid_images.pl: Moving the image, so don't have to delete it anymore
09:12 CIA-34 blueobelisk: egonw * r77 /cb/trunk/ (. feeds/ papers/ posts/ temp/): Ignore autogenerated files
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10:30 thomas_ku moin
10:30 egonw hi thomas_ku
10:39 olas joined #cdk
11:03 egonw olas: http://cb.openmolecules.net/rdf/?InChI=1/CH4/h1H4
11:23 olas egonw: looks interesting
11:23 olas What's the intended usage?
11:23 olas How about a client in Bioclipse?
11:23 egonw quite so :)
11:24 egonw need a bit more tuning...
11:24 egonw e.g. on how to deal with the plugins, DC data, etc
11:24 egonw btw, I like the 'Bookmark this on delicious' feature :)
11:31 olas what's that?
11:41 egonw del.icio.us ??
11:41 egonw you don't know that?
11:41 egonw social (online) bookmarking
11:41 egonw eg http://del.icio.us/egonw
11:41 lambdabot2 Title: egonw's bookmarks on del.icio.us
11:42 egonw my last bookmark is actually a link to the above RDF url :)
11:42 egonw lambdabot2: do you not read RDF ???
11:42 egonw (just noted he picked not up that URL)
11:42 egonw s/he/it/
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12:09 CIA-34 cdk: fichte01 * r471 /trunk/protonprediction/Data/ (5 files in 3 dirs):
12:09 CIA-34 bioclipse: ospjuth * r3621 /trunk/playground/plugins/net.bioclipse.biomoby/s​rc/net/bioclipse/biomoby/views/SeaHawkView.java: Tried to get a SeaHawk browser (Swing-based) into an SWT View with very limited success...
12:10 CIA-34 bioclipse: ospjuth * r3622 /trunk/playground/plugins/net.bioclipse.​biomoby/src/net/bioclipse/biomoby/views/ (6 files): Created a model for the BioMobyView, now filled with Authorities and their services.
12:11 CIA-34 bioclipse: ospjuth * r3623 /trunk/playground/plugins/net.bioclipse.biomoby/ (3 files in 3 dirs): Updated manifest and added some tests in standalone action
13:30 AndrewW good morning
13:33 egonw hi AndrewW
13:36 Nout hiho
13:37 AndrewW 6:36am here
13:37 AndrewW but then here is Sunnyvale, CA
13:51 egonw :)
13:51 egonw has SciFoo started yet?
13:52 egonw AndrewW: read my blog
13:56 AndrewW egonw: will do
13:56 AndrewW and Friday
13:57 AndrewW egonw: the RDF stuff?
13:57 egonw tomorrow, good
13:58 AndrewW tomorrow our time, Saturday morning yours
13:58 AndrewW grddl's interesting; I've got some work I've not announced yet which is in this area
13:59 egonw yes, RDF stuff
13:59 AndrewW (not really HTML-focussed though)
13:59 shk3 joined #cdk
13:59 egonw hi shk3
13:59 shk3 hi
13:59 AndrewW all that stuff looks cool and useful
14:00 AndrewW it'll mesh well with what i'm doing (if you think of it as a GRDDL analogue - in functionality at least - for CML dialects then you're in the right territory)
14:00 egonw was fun doing at least
14:00 egonw right, thought so :) that's why I mentioned it...
14:00 egonw I plan to scrape info from various sources (think pubchem, nmrshiftdb, chemspider)
14:00 egonw and find contridictions etc...
14:01 egonw contrAd...
14:01 egonw asked on the BO mailing list if other molecular RDF sources are available...
14:01 egonw I think the time is ready to get organized here...
14:01 egonw (across the web, that is)
14:02 egonw btw, the HTML frontend, autogenerated with a XSLT stylesheet, uses RDFa...
14:02 egonw would be funny to add a GRDDL to it too, to create RDF from HTML from RDF :)
14:03 egonw AndrewW: do you know Matt Harvey?
14:05 AndrewW no
14:06 AndrewW that's kinda cool
14:06 AndrewW my work is focussing on large corpora of CML
14:06 AndrewW (eg computational simulations, high-throughput)
14:06 egonw Henry Rzepa responded to my email, and asked me to get in contact with him on RDF...
14:06 AndrewW so data extraction and processing from those
14:06 egonw will get back on that
14:06 AndrewW i know henry's interested in rdf but i don't actually have too much to do with him
14:08 egonw was Peter going to SciFoo too?
14:12 AndrewW peter arrives sometime today
14:18 egonw AndrewW: do you plan to blog about things on SciFoo?
14:18 AndrewW egonw: yeah
14:19 AndrewW if there's anything i can blog :)
14:27 egonw I'm sure there will be
14:27 AndrewW yeah, technically the science is under Chatahm House rules
14:27 AndrewW so shouldn't be talked about without permission
14:27 AndrewW but there'll be stuff I can write about
14:28 egonw ah, interesting...
14:28 egonw had not expected that for SciFoo...
14:43 AndrewW you can talk about the work in general
14:43 AndrewW but you can't identify anyone who doesn't want to be identified
14:43 AndrewW so people can talk about unpublished work etc
14:46 egonw right
14:46 egonw yeah, that's only too common...
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18:42 CIA-34 cdk: rajarshi * r8648 /trunk/cdk/src/org/openscience/​cdk/qsar/descriptors/molecular/ (4 files): Updated Javadocs
19:49 CIA-34 cdk: fichte01 * r472 /trunk/protonprediction/Data/o​utput2/Models/Classification/ (4 files):
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