Camelia, the Perl 6 bug

IRC log for #cdk, 2007-08-08

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
00:03 CIA-32 jmol: hansonr * r8046 /trunk/Jmol/ (11 files in 4 dirs): (log message trimmed)
00:03 CIA-32 jmol: version=11.3.9
00:03 CIA-32 jmol: # new feature: symmetryRange: load "someFile" {mmm nnn 1|0} range x.x
00:03 CIA-32 jmol:  where x.x is a maximum distance away
00:03 CIA-32 jmol:  from closest atom in the base cell
00:03 CIA-32 jmol: # new feature: synchronization of applets using JavaScript
00:03 CIA-32 jmol: # new feature: synchronization of applets using Jmol scripts:
00:16 cpyang_ changed the nick to Conrad
01:45 CIA-32 jmol: hansonr * r8047 /trunk/Jmol/src/org/jmol/viewer/ (Compiler.java Eval.java Token.java): version=11.3.9 # bug fix: synchronization of applets using Jmol scripts
02:25 CIA-32 jmol: hansonr * r8048 /trunk/Jmol/src/org/jmol/viewer/ (Compiler.java Jmol.properties): version=11.3.9 synchronization bug fix
02:30 CIA-32 jmol: hansonr * r8049 /trunk/Jmol/src/org/jmol/viewer/Compiler.java: version=11.3.9 synchronization bug fix
02:39 CIA-32 jmol: hansonr * r8050 /trunk/Jmol/src/org/jmol/viewer/Compiler.java: version=11.3.9 synchronization bug fix
04:24 CIA-32 jmol: hansonr * r8051 /trunk/Jmol/src/org/jmol/adapter​/smarter/AtomSetCollection.java:
04:24 CIA-32 jmol: 11.3.9 # new feature: symmetryRange: load {mmm nnn 1|0} -x.x
04:24 CIA-32 jmol:  where x.x is a maximum distance away from closest atom
04:24 CIA-32 jmol:  in the base SYMMETRY set (as opposed to the base UNIT CELL set)
06:16 jbrefort joined #cdk
07:32 olas joined #cdk
07:42 jonalv joined #cdk
07:55 carsten joined #cdk
07:56 CIA-32 bioclipse: ospjuth * r3651 /trunk/playground/plugins/net.bioclipse.biomoby/s​rc/net/bioclipse/biomoby/BioclipseMobyModel.java: Added refresh actions to cache impl
07:58 CIA-32 bioclipse: ospjuth * r3652 /trunk/playground/plugins/net.biocl​ipse.biomoby/src/net/bioclipse/biom​oby/model/MobyViewServiceType.java: Fixed lazy loading problem in service type
07:59 CIA-32 bioclipse: ospjuth * r3653 /trunk/playground/plugins/net.biocl​ipse.biomoby/src/net/bioclipse/biom​oby/model/BioclipseMobyThread.java: Added thread for refreshing list in background
07:59 CIA-32 bioclipse: ospjuth * r3654 /trunk/playground/plugins/net.bioclipse.​biomoby/src/net/bioclipse/biomoby/views/ (MobyView.java MobyViewContentProvider.java): Use new BG loading of resources
08:21 neksa joined #cdk
08:25 cpyang_ joined #cdk
08:38 jbrefort joined #cdk
08:50 egonw joined #cdk
08:52 carsten jpansanel: you cannot merge all changes I think
08:52 carsten but 90% or so
08:58 cpyang joined #cdk
09:22 jpansanel moin
09:22 jpansanel hi carsten
09:22 jpansanel ok
09:22 jpansanel neksa : I've updated chemical-structures
09:22 jpansanel (svn commit sis running)
09:23 jpansanel I could validate the cml file with Bioclipse
09:23 neksa jpansanel: thanks! that's good news. I used the structure from your blog post.
09:23 neksa are there any changes since that time?
09:26 jpansanel I think they are only minor changes
09:28 jpansanel (like encoding  attibrut from ?Xxml
09:28 jpansanel bondarray is bondArray
09:28 jpansanel atomarray is atomArray
09:29 jpansanel and propertylist is propertyList
09:30 neksa jpansanel: ack
09:32 jpansanel (case issues are coming from blogspot *wysiwyg features* )
09:32 CIA-32 bioclipse: ospjuth * r3655 /trunk/playground/plugins/net.biocli​pse.biomoby/src/net/bioclipse/biomob​y/views/MobyViewLabelProvider.java: Use icons for moby services
09:32 CIA-32 bioclipse: ospjuth * r3656 /trunk/playground/plugins/net.biocl​ipse.biomoby/src/net/bioclipse/biom​oby/model/MobyViewServiceType.java: Allow for refresh of children
09:34 CIA-32 bioclipse: ospjuth * r3657 /trunk/playground/plugins/net.bioclip​se.biomoby/src/net/bioclipse/biomoby/ (3 files in 2 dirs): Added refresh event
09:34 CIA-32 bioclipse: ospjuth * r3658 /trunk/playground/plugins/net.bioclipse.biomoby​/src/net/bioclipse/biomoby/views/MobyView.java: Added refresh and update cache actions
09:35 CIA-32 bioclipse: ospjuth * r3659 /trunk/playground/plugins/net.biocl​ipse.biomoby/src/net/bioclipse/biom​oby/model/MobyViewContainer.java: Fixed NPE in createChildren
09:35 CIA-32 bioclipse: ospjuth * r3660 /trunk/playground/plugins/net.bioclipse.​biomoby/src/net/bioclipse/biomoby/model/ (MobyViewEmpty.java MobyViewError.java MobyViewLoading.java): Added new state objects for lazy loading
09:35 egonw jpansanel: the identifier@convention attribute's content is not qualified yet
09:36 egonw you should (not must) define the namespace associated with the 'iupac' prefix
09:36 egonw not for this release, but for the future...
09:37 egonw however, for the @dictRef values this is really important... please define the namespace behind the 'cml' prefix
09:37 egonw and unit prefix
09:37 egonw and xsd prefix
09:40 egonw olas: is boosting his ohloh ranking again :)
09:53 CIA-32 bioclipse: ospjuth * r3661 /trunk/playground/plugins/net.bioclip​se.biomoby/src/net/bioclipse/biomoby/​views/MobyViewContentProvider.java: Catch refresh exception. No idea how to resolve this so just ignoring it.
09:54 CIA-32 bioclipse: ospjuth * r3662 /trunk/playground/plugins/net.bioclipse.biomoby/s​rc/net/bioclipse/biomoby/BioclipseMobyModel.java: Fixed notifications when updating cache
09:55 CIA-32 bioclipse: ospjuth * r3663 /trunk/playground/plugins/net.bioclip​se.biomoby/src/net/bioclipse/biomoby/​views/MobyViewContentProvider.java: Commented exception due to refresh called on uninitialized viewer
10:01 jbrefort joined #cdk
11:08 CIA-32 bioclipse: ospjuth * r3664 /trunk/playground/plugins/net.bioclipse.biomoby/ (2 files in 2 dirs): Removed unused dialog and added whale icon
11:08 CIA-32 bioclipse: ospjuth * r3665 /trunk/plugins/net.bioclipse/src/n​et/bioclipse/util/ImageUtils.java: Allow for lookup of icons by pluginID and relative path
11:12 egonw joined #cdk
11:43 CIA-32 bioclipse: biocoder * r3666 /trunk/plugins/net.bioclipse.statistics/src/net/b​ioclipse/model/MatrixResourcePropertySource.java: Updated name for propertydescriptor
11:46 CIA-32 jmol: hansonr * r8052 /trunk/Jmol/src/org/jmol/v​iewer/StatusManager.java: version=11.3.9 synchronization bug fix
12:17 CIA-32 bioclipse: biocoder * r3667 /trunk/plugins/net.bioclipse.statistics/sr​c/net/bioclipse/model/MatrixResource.java: Wrote new matrix parser that can handle tab, space, and comma separated files with column and row headers
12:18 CIA-32 bioclipse: biocoder * r3668 /trunk/plugins/net.bioclip​se.statistics/plugin.xml: added csv as an extension for matrix files
13:23 jonalv joined #cdk
13:57 steinbeck joined #cdk
13:57 steinbeck cheers
13:57 steinbeck Nielsout: around?
13:57 steinbeck What was your blog url again
13:57 steinbeck ?
13:58 Nielsout yeh i'm around yeh
13:58 Nielsout http://progz-jchem.blogspot.com/ steinbeck
13:58 lambdabot2 Title: Dutch summer of code - jchempaint
13:59 steinbeck thanks :-)
13:59 Nielsout sure np :)
13:59 Nielsout hmm I should blog something abuot uthe looks of the wedges
14:00 steinbeck right
14:00 steinbeck that's why I asked
14:01 steinbeck did you see rich apodacas blog item on that topic?
14:03 Nielsout hmm thikn Idid see it yeh
14:03 Nielsout he was talking about setting up something like css right?
14:06 steinbeck right - and a bit on the question of good-looking wedges :-)
14:06 steinbeck http://depth-first.com/articles/2007/​07/13/making-your-2d-structures-look-​good-firefly-styles-and-stylesheets
14:06 lambdabot2 Title: Making Your 2D Structures Look Good: Firefly, Styles and Stylesheets, http://tinyurl.com/275y4j
14:06 steinbeck thanks lambdabot2
14:13 steinbeck left #cdk
14:14 |thomas_ku| joined #cdk
14:15 |thomas_ku| moin
14:28 Nielsout yo |thomas_ku|
14:42 CIA-32 bioclipse: jonalv * r3669 /trunk/plugins/net.bioclipse.statistics/ (6 files in 4 dirs):
14:42 CIA-32 bioclipse: Added the Nebula Grid Widget and wrote a new MatrixEditor called GridEditor that uses it instead of KTable. Both editors remain for now. I have not succeded in getting the old editor to be the default editor.
14:42 CIA-32 bioclipse: The grid editor currently slurps all rows into memory at the same time but this should not be the behavior later on.
14:44 egonw joined #cdk
15:18 CIA-31 joined #cdk
16:06 carsten joined #cdk
16:53 CIA-31 joined #cdk
17:40 CIA-1 joined #cdk
18:29 egonw joined #cdk
19:20 CIA-1 cdk: mario_baseda * r8672 /trunk/cdk-taverna/ (8 files in 4 dirs): Classes modified/added
19:27 egonw Nielsout: around?
19:32 edrin joined #cdk
19:33 Nielsout yeh around now egonw
19:33 egonw good... have you seen rutger around?
19:33 egonw have not had contact with him much yet...
19:33 Nielsout hm nope think not
19:33 egonw since our previous meeting...
19:34 Nielsout oh
19:35 egonw haven't seen any results either, so a bit worried...
19:35 Nielsout well hopefully he'll be there tommorrow
19:35 egonw yeah, I really hope so...
19:35 egonw well, have not heard otherwise
19:36 CIA-1 jmol: hansonr * r8053 /trunk/Jmol/src/org/jmol/ (4 files in 3 dirs): version=11.3.9 isosurface MEP mapping to plane minor bug fix
19:37 Nielsout could you bring your laptop tommorrow egonw?
19:41 egonw yes
19:41 egonw will go to bed now
19:41 egonw cu tomorrow in A'dam
19:41 Nielsout oki
19:41 Nielsout cu tommorrow :)
20:13 CIA-1 jmol: nicove * r8054 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: Version
20:30 CIA-1 jmol: nicove * r8055 /trunk/Jmol-FAH/projects/ (p2653.xyz.gz p3604.xyz.gz): Folding@Home
21:19 CIA-1 joined #cdk
22:24 neksa_ joined #cdk
22:56 CIA-1 jmol: hansonr * r8056 /trunk/Jmol/src/org/jmol/ (7 files in 4 dirs):
22:56 CIA-1 jmol: 11.3.10
22:56 CIA-1 jmol: # new feature: simple calculation of approximate dipole moment from charge distributions.
22:56 CIA-1 jmol: # dipole molecular # from file value if provided
22:56 CIA-1 jmol: # dipole calculate molecular # from "center of gravity" of charges calculation
23:43 CIA-1 jmol: hansonr * r8057 /trunk/Jmol/src/org/jmol/modelset/ModelSet.java:
23:43 CIA-1 jmol: 11.3.10 calculation needs checking.
23:43 CIA-1 jmol: # new feature: simple calculation of approximate dipole moment from charge distributions.
23:43 CIA-1 jmol: # dipole molecular # from file value if provided
23:43 CIA-1 jmol: # dipole calculate molecular # from "center of gravity" of charges calculation

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary