Camelia, the Perl 6 bug

IRC log for #cdk, 2007-08-09

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All times shown according to UTC.

Time Nick Message
03:55 CIA-1 jmol: hansonr * r8058 /trunk/Jmol/src/org/jmol/modelset/ModelSet.java:
03:55 CIA-1 jmol: 11.3.10 calculation needs checking.
03:55 CIA-1 jmol: # new feature: simple calculation of approximate dipole moment from charge distributions.
03:55 CIA-1 jmol: # dipole molecular # from file value if provided
03:55 CIA-1 jmol: # dipole calculate molecular # from "center of gravity" of charges calculation
05:57 egonw joined #cdk
05:57 egonw moin
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07:25 thomas_ku moin
07:39 egonw moin
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08:10 Nielsout moggeh
08:14 egonw hi Nielsout, neksa, others
08:21 neksa Morning, egonw!
08:21 egonw hi neksa
08:21 egonw so, how big is your index now? more than 4GB I guess?
08:21 egonw did you index PubChem or so? :)
08:21 neksa egonw: atm Strigi stores fulltext of every document. So it's easy to have 20Gb index or so
08:22 neksa there was a probl with files >4Gb. This issue is resolved
08:22 egonw I was wondering about that... does it store all words, include 'the', 'an' etc?
08:23 egonw or is that up to the backend?
08:23 neksa yes. Jos said we should not remove these words, or word.length()<3
08:23 neksa it is up to backend, but should be controlled  by analyzerconfiguration
08:24 neksa Jos argued, that it could be critical to search for exact match for "e" for example
08:24 egonw :)
08:24 egonw btw, you got my message about not further persuing OSRA?
08:24 egonw I second your judgement there
08:26 neksa I agree it can be critical to search for exact one letter match in some types of query with various extra constraints.
08:26 neksa besides, it works very fast right now, and it does not hurt anybody.
08:27 neksa About OSRA: there is a possibility to process images in PDF as substreams.
08:27 neksa not rendering the whole page, then finding the boxes then cutting it... as ORSA does.
08:27 egonw ok, sounds interesting...
08:27 neksa I do not focus on it right now.
08:28 egonw neksa: BTW, *please spend the next 30 minutes producing two or three blog items* ...
08:29 egonw btw, those 3-letter words take up at most 52.729 chars... if the *all* are present
08:30 neksa atm I'm solving issues with plugged in substreamprovider. it breaks on my machine preventing me to commit. Jos suggested to figure out another way. and this is what I'm doing.
08:30 neksa yes, lucene is smart about that.
08:31 neksa pity, that clucene guy is too busy to merge the new features of Lucene 2.
08:31 egonw ack on substreamprovider
08:31 egonw yes, indeed...
08:32 * neksa gets a coffee and does some blogging routines
08:51 jonalv joined #cdk
08:51 * egonw will be unavailable for the next hour or so
09:04 CIA-1 bioclipse: jonalv * r3670 /trunk/plugins/net.bioclipse.statistics/jars​/org.eclipse.nebula.widgets.grid_1.0.0.jar: New nightly build of Nebula grid widget jar with a bugfix for SWT.VIRTUAL
09:05 CIA-1 bioclipse: jonalv * r3671 /trunk/plugins/net.bioclipse.statistics/s​rc/net/bioclipse/editors/GridEditor.java: Modified the GridEditor to use SWT.VIRTUAL to lazy load matrix rows as needed.
09:07 jonalv egonw, ping
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12:40 CIA-1 jmol: hansonr * r8059 /trunk/Jmol/src/org/jmol/ (6 files in 4 dirs):
12:40 CIA-1 jmol: version=11.3.10_dev
12:40 CIA-1 jmol: # new feature: show frame # based on models in the current frame set, displays information about frames
12:40 CIA-1 jmol: enhanced appletInfo and modelInfo
12:44 CIA-1 jmol: hansonr * r8060 /trunk/Jmol/src/org/jmol/viewer/Viewer.java:
12:44 CIA-1 jmol: version=11.3.10_dev
12:44 CIA-1 jmol: # new feature: show frame # based on models in the current frame set, displays information about frames
12:44 CIA-1 jmol: enhanced appletInfo and modelInfo
12:52 CIA-1 blueobelisk: pansanel * r78 /structures/trunk/ (526 files in 31 dirs): (log message trimmed)
12:52 CIA-1 blueobelisk: Check that all files are UTF-8 encoded
12:52 CIA-1 blueobelisk: Move from exactwt to monoisotopicwt
12:52 CIA-1 blueobelisk: Move bpt and mpt to bp and mp
12:52 CIA-1 blueobelisk: Update indentation from cml files
12:52 CIA-1 blueobelisk: Change xsd:decimal to xsd:double
12:52 CIA-1 blueobelisk: Fix InChi identifiers
13:41 CIA-1 bioclipse: biocoder * r3672 /trunk/plugins/net.bioclipse.statistics/sr​c/net/bioclipse/model/MatrixResource.java: Added fields for column and row headers
14:02 CIA-1 bioclipse: ospjuth * r3673 /trunk/playground/plugins/net.bioclipse.b​iomoby/src/net/bioclipse/biomoby/wizards/ (3 files): Added title image
14:02 CIA-1 bioclipse: ospjuth * r3674 /trunk/playground/plugins/net.biocli​pse.biomoby/src/net/bioclipse/biomob​y/views/MobyViewLabelProvider.java: Use new icons
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14:03 CIA-1 bioclipse: ospjuth * r3675 /trunk/playground/plugins/net.bioclipse.biomoby​/src/net/bioclipse/biomoby/views/MobyView.java: Added refresh and reload actions and fixed offline initialization errors
14:03 CIA-1 bioclipse: ospjuth * r3676 /trunk/playground/plugins/net.bioclip​se.biomoby/src/net/bioclipse/biomoby/​views/MobyViewContentProvider.java: Do not cache ServiceTypes
14:04 CIA-1 bioclipse: ospjuth * r3677 /trunk/playground/plugins/net.biocl​ipse.biomoby/src/net/bioclipse/biom​oby/model/MobyViewServiceType.java: Better error messaging
14:04 CIA-1 bioclipse: ospjuth * r3678 /trunk/playground/plugins/net.biocl​ipse.biomoby/src/net/bioclipse/biom​oby/model/MobyViewContainer.java: Fixed children error reporting
14:05 CIA-1 bioclipse: ospjuth * r3679 /trunk/playground/plugins/net.bioc​lipse.biomoby/src/net/bioclipse/bi​omoby/model/MobyViewCentral.java: Use non-cached list of servicetypes
14:06 CIA-1 bioclipse: ospjuth * r3680 /trunk/playground/plugins/net.bioclipse.biomoby/s​rc/net/bioclipse/biomoby/BioclipseMobyModel.java: Do not update cache in job
14:06 CIA-1 bioclipse: ospjuth * r3681 /trunk/playground/plugins/net.biocl​ipse.biomoby/src/net/bioclipse/acti​ons/ExecuteMobyServiceAction.java: Do not update cache in job
14:06 CIA-1 bioclipse: ospjuth * r3682 /trunk/playground/plugins/net.bioclipse.biomoby/sr​c/net/bioclipse/biomoby/UpdateCacheListener.java: Added listener for updateCache job. Not used currently.
14:07 CIA-1 bioclipse: ospjuth * r3683 /trunk/playground/plugins/net.bioclipse.biomob​y/src/net/bioclipse/actions/testBiomoby2.java: Standalone test to try complex service (failing at present)
14:08 CIA-1 bioclipse: ospjuth * r3684 /trunk/playground/plugins/net.​bioclipse.biomoby/plugin.xml: Removed SeahawkView as it is not working and use new action for Moby Service View.
14:09 CIA-1 bioclipse: ospjuth * r3685 /trunk/playground/plugins/n​et.bioclipse.biomoby/icons/ (6 files): Added new icons
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14:23 CIA-1 bioclipse: ospjuth * r3686 /trunk/playground/plugins/net.bioclipse.biomoby​/src/net/bioclipse/biomoby/views/MobyView.java: Added run action for services
14:23 CIA-1 bioclipse: ospjuth * r3687 /trunk/playground/plugins/net.biocl​ipse.biomoby/src/net/bioclipse/biom​oby/model/MobyViewServiceType.java: Set description for children
14:23 carsten Many many changes in BioClipse in the last weeks...
14:26 CIA-1 bioclipse: ospjuth * r3688 /trunk/playground/plugins/net.biocl​ipse.biomoby/src/net/bioclipse/biom​oby/model/MobyPropertySource.java: Only show name and description in properties view
14:28 CIA-1 bioclipse: ospjuth * r3689 /trunk/playground/plugins/n​et.bioclipse.biomoby/icons/ (6 files): Added some more icons
14:29 CIA-1 bioclipse: ospjuth * r3690 /trunk/playground/plugins/net.b​ioclipse.biomoby/icons/wizard/ (. run_wiz.png): Added some more icons
14:30 CIA-1 bioclipse: ospjuth * r3691 /trunk/playground/plugins/net.bioclipse.biomoby/: Added svn:ignore
15:18 olas left #cdk
16:53 CIA-1 jmol: hansonr * r8061 /trunk/Jmol/src/org/jmol/ (geodesic/EnvelopeCalculation.java viewer/Jmol.properties): 11.3.10 bug fix dots nn% not operational
16:59 CIA-1 jmol: hansonr * r8062 /branches/v11_2/Jmol/src/org/jmol/ (geodesic/EnvelopeCalculation.java viewer/Jmol.properties): 11.2.9 bug fix dots nn% not operational
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18:11 Nielsout wb egonw  :)
18:12 egonw_ hi Nielsout
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