Camelia, the Perl 6 bug

IRC log for #cdk, 2007-08-20

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary

All times shown according to UTC.

Time Nick Message
06:16 egonw joined #cdk
07:22 thomas_ku joined #cdk
07:26 thomas_ku moin
07:35 egonw hi thomas_ku
07:52 jonalv joined #cdk
08:24 jpansanel moin
08:38 egonw hi jpansanel
08:42 Nout joined #cdk
08:48 egonw hi Nout
08:51 Nout morning
08:57 Nout installing debian on a 60gb disk in some old pc and after rebooting figuring out the bios doesn't support the disk is not smart :/
08:58 egonw :)
08:58 egonw IIRC, the trick is to make a small first partition... say 500MB, for /boot
08:59 * jonalv thinks it is strange days we live in when 500 MB is small...
08:59 Nout yeah it's something like that
09:02 Nout ah well, will just put another hard disk in, probabaly the easyest solution
09:03 Nout I can remember I had the same issue like 2 years ago with the same machine, stupid I didn't think about that yesterday
09:03 CIA-1 blueobelisk: egonw * r84 /cb/trunk/parse_wp_links.pl:
09:03 CIA-1 blueobelisk: Added an offline mode.
09:03 CIA-1 blueobelisk: Remove the #-part in URL, the make them less unique; it's the same HTML anyway.
10:16 CIA-1 cdk: fichte01 * r490 /trunk/protonprediction/Data/ (9 files in 3 dirs):
10:25 CIA-1 cdk: fichte01 * r491 /trunk/protonprediction/Data/output2/Models/ (3 files):
10:51 Conrad joined #cdk
10:51 jpansanel joined #cdk
11:13 dleidert joined #cdk
11:47 Nout joined #cdk
11:52 cpyang joined #cdk
11:52 jonalv joined #cdk
11:52 CIA-1 joined #cdk
11:53 dleidert joined #cdk
11:53 Conrad joined #cdk
11:53 jpansanel joined #cdk
12:39 carsten joined #cdk
12:45 brefort joined #cdk
12:55 brefort changed the nick to jbrefort
12:56 jbrefort hey carsten, just installed kalzium on my new laptop ;)
12:56 carsten :)
12:57 jbrefort it's the first time I install kalzium
13:04 carsten jbrefort: cool to see you patch
13:04 carsten that means that for KDE 4.1 I can depend on it
13:04 jbrefort you mean, the openbabel patch?
13:05 carsten yEWS
13:05 carsten yes
13:05 jbrefort yes, I can now display cif files :)
13:25 steinbeck joined #cdk
13:25 steinbeck Good morning from Boston
13:26 * egonw is back
13:27 egonw hi steinbeck
13:27 steinbeck H iEgon
13:27 thomas_ku hi steinbeck
13:28 thomas_ku how is bosten?
13:30 * steinbeck made Egon an Apple product
13:30 steinbeck Hi Thomas
13:33 egonw huh? you sent me an Apple notebook?
13:34 CIA-1 cdk: fichte01 * r492 /trunk/protonprediction/Data/o​utput2/Models/Classification/ (145 files):
14:09 CIA-1 jmol: nicove * r8116 /trunk/Jmol-FAH/projects/ (p3631.xyz.gz p3730.xyz.gz): Folding@Home
14:11 CIA-1 bioclipse: jonalv * r3704 /trunk/playground/plugins/net.bioclipse.keyr​ing/src/net/bioclipse/keyring/KeyRing.java:
14:11 CIA-1 bioclipse: removed outcommented logging code,
14:11 CIA-1 bioclipse: wrote javadoc,
14:11 CIA-1 bioclipse: added method to check whether a user with a certain accounttype (identified by name) is logged in
14:23 CIA-1 cdk: fichte01 * r493 /trunk/protonprediction/Data/ (8 files in 2 dirs): (log message trimmed)
14:23 CIA-1 cdk: --This
14:23 CIA-1 cdk:  line, and those below, will be ignored--
14:23 CIA-1 cdk: M Data/output1/dataY.txt
14:23 CIA-1 cdk: M Data/output2/Models/PlotErrorsModelsBoth _01.png
14:24 CIA-1 cdk: M Data/output2/Models/PlotErrorsModelsBoth _02.png
14:24 CIA-1 cdk: M Data/output2/Models/PlotErrorsModelsReg _02.png
14:24 dleidert joined #cdk
14:38 jonalv joined #cdk
14:54 Nout joined #cdk
15:35 shk3 joined #cdk
16:11 egonw joined #cdk
16:21 Nout hey egonw
16:50 CIA-1 jmol: hansonr * r8117 /trunk/Jmol/src/org/jmol/ (4 files in 2 dirs): 11.3.11 new feature: Jaguar PLT file reader for isosurface command
17:02 CIA-1 bioclipse: jonalv * r3705 /trunk/plugins/net.bioclipse.statistics/s​rc/net/bioclipse/editors/GridEditor.java: minor hack that works around a current bug in the Grid widget. Now the row headers works.
17:16 egonw hoi Nout
17:17 egonw heb je nog iets leuks te laten zien?
17:20 CIA-1 bioclipse: jonalv * r3706 /trunk/playground/plugins/net.bioclipse.keyring/ (META-INF/MANIFEST.MF src/net/bioclipse/keyring/KeyRing.java): Wrote some methods for getting username and password based upon acountType names. And some more javadocs.
18:11 dleidert joined #cdk
18:21 carsten joined #cdk
18:34 egonw carsten: got a sec?
18:35 carsten perhaps :)
18:35 egonw :)
18:35 egonw 1. do our GSoC students have to upload code to code.google.com?
18:35 carsten yesm of course
18:35 egonw 2. what time is 7UTC in CEST time?
18:35 egonw re1: how does that work?
18:35 carsten UTC is german -2
18:36 carsten CEST == New York Time?
18:36 egonw so, 7UTC has already past?
18:36 egonw CEST := central european summer time
18:36 carsten oh :)
18:36 ksvladimir joined #cdk
18:36 carsten ksvladimir: hi
18:36 carsten perhaps you do have to upload today
18:36 ksvladimir carsten: hello again
18:36 carsten even if we agreed otherwise
18:37 carsten egonw just told me the deadline is oerhaos already over...
18:37 egonw carsten: I got no idea...
18:37 carsten ksvladimir: did you already upload?
18:37 ksvladimir carsten: no
18:38 carsten perhaps you still have to, no matter what
18:38 ksvladimir timeline clearly says that I can upload between 20 and 31
18:38 egonw carsten: thiago is the one to ask, correct?
18:38 carsten egonw: yes
18:38 carsten ksvladimir: which timezone?
18:38 ksvladimir carsten: there is even no way to upload it in webapp before 20 !!!
18:38 carsten ksvladimir: ah, uploaed until aug 31
18:39 ksvladimir carsten: I'll forward you one more mail
18:39 carsten k
18:40 egonw ksvladimir: please sent me a copy too...
18:40 ksvladimir egonw: email ?
18:40 egonw ok, so no upload required today?
18:40 ksvladimir carsten: egonw: sent
18:40 egonw neksa will be happy to hear that...
18:40 egonw ksvladimir: thanx !
18:40 egonw received
18:42 ksvladimir carsten: egonw: so I have to go...
18:42 egonw carsten: http://groups.google.com/group/goog​le-summer-of-code-announce/web/how-​to-provide-google-with-sample-code
18:42 lambdabot2 Title: How To Provide Google with Sample Code - Google Summer of Code Announce | Google ..., http://tinyurl.com/3danpc
18:42 egonw thiago just gave me this link
18:45 egonw carsten: OK, it's 19:00 UTC... so in 15 minutes...
18:46 egonw ah, no
18:46 egonw ah, it is...: http://groups.google.com/group/google-summer-of​-code-announce/web/midterm-survey-information-2
18:46 lambdabot2 Title: Final Survey Information - 2007 - Google Summer of Code Announce | Google Groups, http://tinyurl.com/2edrr3
18:49 carsten egonw: what is your email?P
19:00 steinbeck joined #cdk
19:00 egonw carsten: your student had already forwarded the message :)
19:00 egonw hi steinbeck
19:02 carsten ok
19:06 CIA-1 cdk: fichte01 * r494 /trunk/protonprediction/Data/o​utput2/Models/Classification/ (37 files):
19:07 steinbeck Ah, egonw still (or again) around
19:07 steinbeck egonw:  is any of the CUBIC servers online for you via http?
19:07 steinbeck such as wiki or almost?
19:08 steinbeck Hi Egon
19:08 egonw sort of
19:08 egonw wiki points to bowiki/ which fails...
19:08 egonw but server seems up
19:08 egonw almost is not responding...
19:09 egonw restarted apache
19:10 egonw but still not response...
19:10 steinbeck egonw: thanks
19:10 steinbeck I cannot access any of them
19:12 egonw mmm... almost is not responding...
19:12 egonw apache restart does not seem to have effect...
19:15 egonw steinbeck: got unresolved deps in packages...
19:15 egonw not sure how that can be fixed...
19:16 steinbeck that's strange
19:16 steinbeck it worked all the time and I did not mess with it.
19:16 egonw it complains about missing libcrypto bla
19:16 egonw because of MySQL-Max
19:17 steinbeck strange
19:17 steinbeck very strange
19:17 steinbeck it's time to bring this machine down. But before we need to secure things
19:18 egonw right...
19:18 egonw 893M    htdocs
19:27 neksa joined #cdk
19:30 jbrefort hi neksa, could you compile openbabel?
19:32 neksa hi! I switched to 2.1.1
19:33 neksa I would be able to try your fixes tomorrow. Apparently Chris is working on Windows
19:33 egonw steinbeck: found the htdocs for nmrshiftdb...
19:33 egonw but not for jrg
19:33 carsten OPenbabal 2.2 will countain proper SpaceGroup support, neksa :)
19:34 carsten thanks to jbrefort
19:35 neksa thanks jbrefort!!
19:36 jbrefort neksa, yes he works on Windows and often breaks unix build
19:36 jbrefort np, I needed space groups ;)
19:41 neksa jbrefort: it would be nice if you could provide me some sample files with space groups, initially for my strigi-chemical analyzer
19:42 neksa but I will put the samples into Blue Obelisk test file repository, that's why I need FREE samples.
19:50 CIA-1 cdk: shk3 * r495 /trunk/protonprediction/Data/input/ (data.txt dataX.txt dataY.txt): new data files
20:13 CIA-1 cdk: shk3 * r496 /trunk/nmrshiftdb/lib/cdk-smiles.jar: smiles is aromatic again
20:19 jbrefort neksa, we can make free samples for well known crystals, IMHO (unless the cell parameters of sodium chloride is not free...)
20:21 neksa jbrefort: thanks! the point is that I need a good coverage of file formats.
20:22 jbrefort I know only two file formats for crystals: cif and cml
20:26 * egonw knows one or two more :)
20:26 egonw OK, /me will shut down for today... (and my laptop too)
20:29 shk3 egonw?
20:29 shk3 one question
20:30 egonw quick one...
20:35 egonw shk3: ?
20:35 egonw really want to close IRC...
20:36 shk3 sorry
20:36 shk3 didn't get your email with the cml file
20:36 egonw then how do you know about it?
20:36 egonw from Peter's reply?
20:37 shk3 you said it in the chat
20:37 shk3 didn't you
20:37 shk3 ?
20:37 shk3 I have something in mind you said you send a file and shall comment on it
20:38 egonw yes, I did sent a file...
20:38 egonw maybe wrong address...
20:38 egonw where should I send it/
20:38 egonw ?
20:38 shk3 stefhk3@web.de
20:39 egonw ah, sent it to your halle account...
20:39 egonw sorry
20:39 shk3 no problem
20:40 egonw ok, also forwarded Peter's reply...
20:40 egonw it has 90 test files...
20:40 shk3 thanks
20:40 egonw will convert those to CMLSpect tomorrow...
20:40 egonw will send you those then...
20:40 egonw can you please check if you can work with the CMLSpect file I just sent?
20:41 egonw it opens in Bioclipse from SVN, so you can check what it should look like...
20:41 egonw btw, Peter notes that assignments are not always very good...
20:41 egonw and these 90 might even be the best we can expect...
20:41 shk3 looks good
20:41 egonw the original DX files also have continous spectra...
20:41 shk3 we can check with prediction
20:41 egonw so maybe you can propose to do the assignment with NMRShiftDB...
20:42 egonw but I think we should better put those entries up for manual inspection...
20:42 egonw as prestep to the normal review process...
20:42 egonw but not sure if there is architecture to do that...
20:42 shk3 hm, more or less
20:43 egonw can NMRShiftDB also handle continuous spectra?
20:44 egonw store and display them, or so?
20:44 shk3 no
20:44 egonw as backup data for the assigned peak spectra..
20:44 egonw OK
20:44 shk3 yes
20:44 shk3 storage should be easy
20:44 egonw ack
20:45 egonw and what about export that in the CMLSpect as NMRShiftDB does?
20:45 egonw then people could always get an entry with Bioclipse from NMRShiftDB if they want to see the continous version...
20:45 egonw OK, enough for now...
20:46 egonw will be back online tomorrow
20:46 shk3 bye bye
20:56 CIA-1 blueobelisk: pansanel * r85 /structures/trunk/src/ (524 files in 30 dirs):
20:56 CIA-1 blueobelisk: Add the following lines to the namespace definition of each molecule:
20:56 CIA-1 blueobelisk: xmlns:cml="http://www.xml-cml.org/dict/cml"
20:56 CIA-1 blueobelisk: xmlns:units="http://www.xml-cml.org/units/units"
20:56 CIA-1 blueobelisk: xmlns:xsd="http://www.w3.org/2001/XMLSchema"
20:56 CIA-1 blueobelisk: xmlns:iupac="http://www.iupac.org"
20:56 lambdabot2 Title: Javascript Page Test
21:21 dleidert left #cdk
21:29 CIA-1 cdk: fichte01 * r497 /trunk/protonprediction/Data/input/ (9 files in 2 dirs):
21:46 CIA-1 bioclipse: shk3 * r3707 /trunk/playground/plugins/net.bioclipse.nmrshiftd​b/src/bc_nmrshiftdb/intro/MynmrshiftdbIntro.java: better intro screen
22:51 neksa_ joined #cdk

| Channels | #cdk index | Today | | Search | Google Search | Plain-Text | summary