Camelia, the Perl 6 bug

IRC log for #cdk, 2007-09-15

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All times shown according to UTC.

Time Nick Message
02:17 CIA-31 cdk: djiao * r8927 /trunk/cdk/src/org/openscience/cdk/ (3 files in 2 dirs): Fixed a few smarts matching issues brought up by Rajarshi.
03:37 cpyang joined #cdk
04:51 CIA-31 cdk: egonw * r8928 /trunk/cdk/src/org/openscience/cdk/ (3 files in 3 dirs): Added several new charges atom types for C, S and N
05:02 Conrad joined #cdk
05:14 cpyang_ joined #cdk
05:43 CIA-31 jmol: hansonr * r8272 /trunk/Jmol/src/org/jmol/viewer/ (5 files): (log message trimmed)
05:43 CIA-31 jmol: version=11.3.23
05:43 CIA-31 jmol: # preliminary full script flow control support:
05:43 CIA-31 jmol: # if / else if / else / end if
05:43 CIA-31 jmol: # for / end for
05:43 CIA-31 jmol: # while / end while
05:43 CIA-31 jmol: #
05:48 jbrefort joined #cdk
05:59 CIA-31 jmol: hansonr * r8273 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties:
06:01 CIA-31 jmol: hansonr * r8274 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties:
06:16 Conrad joined #cdk
06:23 Conrad joined #cdk
07:05 jpansanel moin
07:10 jbrefort jpansanel: hello
07:13 jpansanel hello jbrefort
07:13 jpansanel does bkchem work ?
07:13 jbrefort yes, but not as I'd like
07:13 jpansanel what's wrong ?
07:13 jbrefort size of exported images
07:14 jbrefort png and postscript
07:17 jpansanel I've the same issue, with Linux
07:17 jpansanel Therefore, I'm exporting only mol files and convert these files into png
07:22 jbrefort the issue doesn't exist on other platforms?
07:22 * jbrefort only tested on Linux
07:22 jpansanel It didn't try on Win32
07:22 jbrefort Mac?
07:22 jpansanel I didn't try on Mac
07:22 jpansanel But I can do this next tuesday
07:23 jbrefort of course, but almost no chance it will work better
07:23 jpansanel certainly not
07:23 jbrefort this makes it unusable for my colleague
07:24 jpansanel did you try jchempaint ?
07:24 jbrefort not recently
07:24 jbrefort (may be 5 years ago or so)
07:28 jpansanel jbrefort : do you have problem with the size of the output ?
07:28 jbrefort yes, that's it
07:32 jpansanel I'll take a look in the png_cairo.py file
07:32 jpansanel it will be nice to have the right surface
07:35 jpansanel jbrefort : in file -> file properties
07:35 jpansanel you have the following option:
07:35 jpansanel Découpage auto de l'image
07:36 jpansanel works fine
07:36 jbrefort ok, thanks
07:36 * jpansanel must go shopping
07:36 jpansanel see you later
08:45 carsten joined #cdk
10:11 Nout joined #cdk
10:37 Nout morning
14:09 egonw joined #cdk
14:10 egonw moin
14:10 egonw Nout: around?
14:13 Nout hey
14:14 Nout hows germany egonw?
14:17 egonw christoph's house amazing
14:17 Nout cool
14:23 egonw any news from your side?
14:24 Nout hm no not really, was just wondering what I was about to do
14:24 Nout and figured I still hadn't fixed that '-' on a wrong place at some points
14:24 Nout ie with the H above the C
14:26 egonw ack
14:29 egonw I'll try to run the demo editor later this afternoon
14:30 Nout 0kay
14:35 CIA-31 cdk: egonw * r8929 /trunk/cdk/src/org/openscience/cdk/test/atomt​ype/CDKAtomTypeMatcherTestFileReposTest.java:
14:35 CIA-31 cdk: Two updated: 1. now not just checks if an atom type is perceived, but also if
14:35 CIA-31 cdk: this atom type is consistent with the atom. 2) also test some Sybyl MOL2 and PDB
14:35 CIA-31 cdk: files (for the letter a lot still fails, covering only a limited set of atom
14:35 CIA-31 cdk: types, though)
14:36 CIA-31 cdk: egonw * r8930 /trunk/cdk/src/org/openscience/cdk/ (3 files in 3 dirs): Added some common salt kations
14:38 CIA-31 jmol: hansonr * r8275 /trunk/Jmol/src/org/jmol/viewer/ (Compiler.java Eval.java StateManager.java Token.java): (log message trimmed)
14:38 CIA-31 jmol: version=11.3.23
14:38 CIA-31 jmol: # preliminary full script flow control support:
14:38 CIA-31 jmol: # if / else if / else / end if
14:38 CIA-31 jmol: # for / break/ continue/ end for
14:38 CIA-31 jmol: # while / break/ contine/ end while
14:38 CIA-31 jmol: #
14:49 Nout would http://student.science.uva​.nl/~nout/progz/minus.png be correct?
14:54 egonw looks good...
14:54 CIA-31 jmol: hansonr * r8276 /trunk/Jmol/src/org/jmol/viewer/Jmol.properties: version=11.3.23 VERSION
14:55 Nout 0kay
14:56 Nout hmz what should be the 'default' controller mode? I think 'moving' would be ok
15:05 CIA-31 cdk: nielsout * r8931 /trunk/cdk/src/org/openscience/cdk/renderer/progz/ (4 files): Fixed bug showing the formal charge at a wrong place
15:05 * Nout is gone to run too slow for ~30 min
15:26 carsten joined #cdk
15:42 Nout hey carsten
15:51 egonw_ joined #cdk
16:00 Nout ola egonw_
16:02 carsten Moin folks
16:03 carsten egonw: Moin moin
16:03 carsten egonw: A friend of mine likes JMol very much :_)
16:03 carsten I showed it embedded in Jeromes database (yesterday)
16:03 carsten he is very impressed
16:03 carsten and will use it for his teaching .)
16:03 carsten He's also a chem teacher
16:17 Nout hm bleh.. have to make food.. was just about to find some way to add an atom to the chemModel if you click somewhere ;/
16:17 Nout bbl
16:18 egonw_ ack
16:39 egonw_ bbl
18:36 CIA-31 cdk: nielsout * r8932 /trunk/cdk/src/org/openscience/cdk/ (5 files in 2 dirs):
18:36 CIA-31 cdk: Simple version of Controller2DModuleAddAtom added (used to add atoms on mouseclick)
18:36 CIA-31 cdk: To be added: if an atom is selected: change that atom instead of adding one
18:36 * Nout is gone
19:32 CIA-31 jmol: hansonr * r8277 /trunk/Jmol/src/org/jmol/viewer/ (Compiler.java Eval.java Token.java): 11.3.23 code description; minor code tweaks; break n

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